RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ZBTB48P10074 688 aaPredicted RBP19.73■□□□□ 0.75
MCF2L-228ENST00000487354 CHRNDQ07001 517 aa19.73■□□□□ 0.75
MCF2L-228ENST00000487354 GCKRQ14397 625 aa19.73■□□□□ 0.75
MCF2L-228ENST00000487354 ANKRD2Q9GZV1 360 aa19.73■□□□□ 0.75
MCF2L-228ENST00000487354 TRIM17Q9Y577 477 aa19.73■□□□□ 0.75
MCF2L-228ENST00000487354 ZSWIM8A7E2V4 1837 aa19.72■□□□□ 0.75
MCF2L-228ENST00000487354 NEXNQ0ZGT2 675 aa19.72■□□□□ 0.75
MCF2L-228ENST00000487354 C15orf52Q6ZUT6 534 aaKnown RBP19.71■□□□□ 0.75
MCF2L-228ENST00000487354 DLGAP5Q15398 846 aa19.7■□□□□ 0.74
MCF2L-228ENST00000487354 SLC10A4Q96EP9 437 aa19.7■□□□□ 0.74
MCF2L-228ENST00000487354 PPP2R3BQ9Y5P8 575 aa19.7■□□□□ 0.74
MCF2L-228ENST00000487354 CLRN2A0PK11 232 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 SPDYE2BA6NHP3 402 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 TAF5LO75529 589 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 SPDYE6P0CI01 402 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 IL1R1P14778 569 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 INHBEP58166 350 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 CRHR2Q13324 411 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 HABP4Q5JVS0 413 aaKnown RBP19.69■□□□□ 0.74
MCF2L-228ENST00000487354 NBPF12Q5TAG4 269 aaPredicted RBP19.69■□□□□ 0.74
MCF2L-228ENST00000487354 PRMT6Q96LA8 375 aaPredicted RBP19.69■□□□□ 0.74
MCF2L-228ENST00000487354 PTPN18Q99952 460 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 PTPN22Q9Y2R2 807 aa19.69■□□□□ 0.74
MCF2L-228ENST00000487354 CFAP100Q494V2 611 aa19.68■□□□□ 0.74
MCF2L-228ENST00000487354 CD99L2Q8TCZ2 262 aa19.68■□□□□ 0.74
MCF2L-228ENST00000487354 ARMC5Q96C12 935 aa19.68■□□□□ 0.74
MCF2L-228ENST00000487354 MPHOSPH8Q99549 860 aa19.68■□□□□ 0.74
MCF2L-228ENST00000487354 CHMP4AQ9BY43 222 aa19.68■□□□□ 0.74
MCF2L-228ENST00000487354 TESPA1A2RU30 521 aaPredicted RBP19.67■□□□□ 0.74
MCF2L-228ENST00000487354 UNCXA6NJT0 531 aa19.67■□□□□ 0.74
MCF2L-228ENST00000487354 USP2O75604 605 aaPredicted RBP19.67■□□□□ 0.74
MCF2L-228ENST00000487354 FOXO4P98177 505 aa19.67■□□□□ 0.74
MCF2L-228ENST00000487354 FLIIQ13045 1269 aa19.67■□□□□ 0.74
MCF2L-228ENST00000487354 TWISTNBQ3B726 338 aaPredicted RBP19.67■□□□□ 0.74
MCF2L-228ENST00000487354 HELBQ8NG08 1087 aaPredicted RBP19.67■□□□□ 0.74
MCF2L-228ENST00000487354 GCC1Q96CN9 775 aa19.67■□□□□ 0.74
MCF2L-228ENST00000487354 STK31Q9BXU1 1019 aa19.67■□□□□ 0.74
MCF2L-228ENST00000487354 F8W031 263 aaPredicted RBP19.66■□□□□ 0.74
MCF2L-228ENST00000487354 PPP1R12BO60237 982 aaPredicted RBP19.66■□□□□ 0.74
MCF2L-228ENST00000487354 SLC4A2P04920 1241 aa19.66■□□□□ 0.74
MCF2L-228ENST00000487354 KCNJ4P48050 445 aa19.66■□□□□ 0.74
MCF2L-228ENST00000487354 FKBP1AP62942 108 aaKnown RBP19.66■□□□□ 0.74
MCF2L-228ENST00000487354 INTS3Q68E01 1043 aaKnown RBP19.66■□□□□ 0.74
MCF2L-228ENST00000487354 CDAN1Q8IWY9 1227 aa19.66■□□□□ 0.74
MCF2L-228ENST00000487354 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.66■□□□□ 0.74
MCF2L-228ENST00000487354 JAG2Q9Y219 1238 aa19.66■□□□□ 0.74
MCF2L-228ENST00000487354 ERO1AQ96HE7 468 aa19.65■□□□□ 0.74
MCF2L-228ENST00000487354 ANKRD18BA2A2Z9 1011 aa19.64■□□□□ 0.73
MCF2L-228ENST00000487354 LINS1Q8NG48 757 aa19.64■□□□□ 0.73
MCF2L-228ENST00000487354 DNAAF4Q8WXU2 420 aa19.64■□□□□ 0.73
MCF2L-228ENST00000487354 MS4A4AQ96JQ5 239 aa19.64■□□□□ 0.73
MCF2L-228ENST00000487354 VEZTQ9HBM0 779 aa19.64■□□□□ 0.73
MCF2L-228ENST00000487354 EN2P19622 333 aaPredicted RBP19.63■□□□□ 0.73
MCF2L-228ENST00000487354 RASA3Q14644 834 aa19.63■□□□□ 0.73
MCF2L-228ENST00000487354 CCDC27Q2M243 656 aa19.63■□□□□ 0.73
MCF2L-228ENST00000487354 TEPSINQ96N21 525 aa19.63■□□□□ 0.73
MCF2L-228ENST00000487354 IREB2P48200 963 aaKnown RBP19.62■□□□□ 0.73
MCF2L-228ENST00000487354 SUPT20HL1Q3ZLR7 823 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 SPDYE2Q495Y8 402 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 CCDC184Q52MB2 194 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 EPHA10Q5JZY3 1008 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 ZNF804AQ7Z570 1209 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 WWC1Q8IX03 1113 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 ANKRD13AQ8IZ07 590 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 CNKSR2Q8WXI2 1034 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 MYH16Q9H6N6 1097 aa19.62■□□□□ 0.73
MCF2L-228ENST00000487354 FAM205AQ6ZU69 1335 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 SP3Q02447 781 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 FKBP5Q13451 457 aaPredicted RBP19.61■□□□□ 0.73
MCF2L-228ENST00000487354 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.61■□□□□ 0.73
MCF2L-228ENST00000487354 OPTNQ96CV9 577 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 ZNF333Q96JL9 665 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 ELP3Q9H9T3 547 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 EFCC1Q9HA90 598 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 SZT2Q5T011 3432 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 CEP290O15078 2479 aa19.61■□□□□ 0.73
MCF2L-228ENST00000487354 MYO1BO43795 1136 aa19.6■□□□□ 0.73
MCF2L-228ENST00000487354 FXR1P51114 621 aaKnown RBP eCLIP19.6■□□□□ 0.73
MCF2L-228ENST00000487354 BRI3BPQ8WY22 251 aa19.6■□□□□ 0.73
MCF2L-228ENST00000487354 ZNF594Q96JF6 807 aaPredicted RBP19.6■□□□□ 0.73
MCF2L-228ENST00000487354 ZNF70Q9UC06 446 aaPredicted RBP19.6■□□□□ 0.73
MCF2L-228ENST00000487354 FANCIQ9NVI1 1328 aa19.59■□□□□ 0.73
MCF2L-228ENST00000487354 IFIT5Q13325 482 aaKnown RBP19.59■□□□□ 0.73
MCF2L-228ENST00000487354 IL16Q14005 1332 aa19.58■□□□□ 0.73
MCF2L-228ENST00000487354 BEND3Q5T5X7 828 aa19.58■□□□□ 0.72
MCF2L-228ENST00000487354 TDRD7Q8NHU6 1098 aaKnown RBP19.58■□□□□ 0.72
MCF2L-228ENST00000487354 PTCH2Q9Y6C5 1203 aa19.58■□□□□ 0.72
MCF2L-228ENST00000487354 F6X3S4 739 aa19.57■□□□□ 0.72
MCF2L-228ENST00000487354 VGLL4Q14135 290 aa19.57■□□□□ 0.72
MCF2L-228ENST00000487354 GRIK5Q16478 980 aa19.57■□□□□ 0.72
MCF2L-228ENST00000487354 OTUD7BQ6GQQ9 843 aa19.57■□□□□ 0.72
MCF2L-228ENST00000487354 LMBR1LQ6UX01 489 aa19.57■□□□□ 0.72
MCF2L-228ENST00000487354 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.57■□□□□ 0.72
MCF2L-228ENST00000487354 TDRD3Q9H7E2 651 aaKnown RBP19.57■□□□□ 0.72
MCF2L-228ENST00000487354 TRIOBPQ9H2D6 2365 aa19.56■□□□□ 0.72
MCF2L-228ENST00000487354 VAMP4O75379 141 aa19.56■□□□□ 0.72
MCF2L-228ENST00000487354 RBM5P52756 815 aaKnown RBP eCLIP19.56■□□□□ 0.72
MCF2L-228ENST00000487354 MFSD14BQ5SR56 506 aa19.56■□□□□ 0.72
MCF2L-228ENST00000487354 FAM43AQ8N2R8 423 aa19.56■□□□□ 0.72
MCF2L-228ENST00000487354 TMEM39BQ9GZU3 492 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms