RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FRAT2O75474 233 aaPredicted RBP18.28■□□□□ 0.52
USP4-212ENST00000486549 EGFRP00533 1210 aa18.28■□□□□ 0.52
USP4-212ENST00000486549 USP17L8P0C7I0 530 aa18.28■□□□□ 0.52
USP4-212ENST00000486549 HIRAP54198 1017 aaPredicted RBP18.28■□□□□ 0.52
USP4-212ENST00000486549 KIF4BQ2VIQ3 1234 aa18.28■□□□□ 0.52
USP4-212ENST00000486549 FBXO33Q7Z6M2 555 aa18.28■□□□□ 0.52
USP4-212ENST00000486549 TDRD7Q8NHU6 1098 aaKnown RBP18.28■□□□□ 0.52
USP4-212ENST00000486549 ZC3H15Q8WU90 426 aaKnown RBP18.28■□□□□ 0.52
USP4-212ENST00000486549 GMLQ99445 158 aa18.28■□□□□ 0.52
USP4-212ENST00000486549 CHMP4BQ9H444 224 aaKnown RBP18.28■□□□□ 0.52
USP4-212ENST00000486549 SURF6O75683 361 aaKnown RBP18.27■□□□□ 0.52
USP4-212ENST00000486549 CHAF1AQ13111 956 aaPredicted RBP18.27■□□□□ 0.52
USP4-212ENST00000486549 KIAA0825Q8IV33 1275 aa18.27■□□□□ 0.52
USP4-212ENST00000486549 ZBTB40Q9NUA8 1239 aa18.27■□□□□ 0.52
USP4-212ENST00000486549 SASH1O94885 1247 aa18.26■□□□□ 0.51
USP4-212ENST00000486549 ZNF280AP59817 542 aaPredicted RBP18.26■□□□□ 0.51
USP4-212ENST00000486549 CERS5Q8N5B7 392 aa18.26■□□□□ 0.51
USP4-212ENST00000486549 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.26■□□□□ 0.51
USP4-212ENST00000486549 F8W031 263 aaPredicted RBP18.25■□□□□ 0.51
USP4-212ENST00000486549 ADORA1P30542 326 aa18.25■□□□□ 0.51
USP4-212ENST00000486549 OGFOD1Q8N543 542 aa18.25■□□□□ 0.51
USP4-212ENST00000486549 MYOZ2Q9NPC6 264 aa18.25■□□□□ 0.51
USP4-212ENST00000486549 AKAP2Q9Y2D5 859 aa18.25■□□□□ 0.51
USP4-212ENST00000486549 FAM205AQ6ZU69 1335 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 A0A1B0GUL7 405 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 TIMM10P62072 90 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 MFSD14BQ5SR56 506 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 NEUROD6Q96NK8 337 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 HDAC9Q9UKV0 1011 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 CNTNAP1P78357 1384 aa18.24■□□□□ 0.51
USP4-212ENST00000486549 POLR2AP24928 1970 aaKnown RBP18.23■□□□□ 0.51
USP4-212ENST00000486549 RPAP2Q8IXW5 612 aaPredicted RBP18.23■□□□□ 0.51
USP4-212ENST00000486549 PGAP2Q9UHJ9 254 aa18.23■□□□□ 0.51
USP4-212ENST00000486549 EXOC6BQ9Y2D4 811 aa18.23■□□□□ 0.51
USP4-212ENST00000486549 PHKA1P46020 1223 aa18.22■□□□□ 0.51
USP4-212ENST00000486549 FKBP1AP62942 108 aaKnown RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 XAGE2Q96GT9 111 aa18.22■□□□□ 0.51
USP4-212ENST00000486549 GLIS2Q9BZE0 524 aaPredicted RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 GNL3LQ9NVN8 582 aaKnown RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 MKRN1Q9UHC7 482 aaKnown RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 ABT1Q9ULW3 272 aaKnown RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 NOP58Q9Y2X3 529 aaKnown RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 ASTN2O75129 1339 aaPredicted RBP18.22■□□□□ 0.51
USP4-212ENST00000486549 COL1A1P02452 1464 aaPredicted RBP18.21■□□□□ 0.51
USP4-212ENST00000486549 TRAF5O00463 557 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 HMMRO75330 724 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 FMR1Q06787 632 aaKnown RBP eCLIP18.21■□□□□ 0.51
USP4-212ENST00000486549 SCARF1Q14162 830 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 DEFB115Q30KQ5 88 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 CDC37L1Q7L3B6 337 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 GGA3Q9NZ52 723 aa18.21■□□□□ 0.51
USP4-212ENST00000486549 RASSF10A6NK89 507 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 GORABQ5T7V8 394 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 CCDC102BQ68D86 513 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 SIRT2Q8IXJ6 389 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 DCPSQ96C86 337 aaKnown RBP18.2■□□□□ 0.5
USP4-212ENST00000486549 CRBNQ96SW2 442 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 TRPM7Q96QT4 1865 aa18.2■□□□□ 0.5
USP4-212ENST00000486549 APBB1O00213 710 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 ECE1P42892 770 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 MMP14P50281 582 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 NBPF9Q3BBW0 867 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 TNNI3KQ59H18 835 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 ANGEL2Q5VTE6 544 aaKnown RBP18.19■□□□□ 0.5
USP4-212ENST00000486549 USP48Q86UV5 1035 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 TBC1D22AQ8WUA7 517 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 TTF2Q9UNY4 1162 aaKnown RBP18.19■□□□□ 0.5
USP4-212ENST00000486549 FPGT-TNNI3KV9GXZ4 949 aa18.19■□□□□ 0.5
USP4-212ENST00000486549 RBM5P52756 815 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP4-212ENST00000486549 GRIK5Q16478 980 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 IFFO2Q5TF58 517 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 KRT26Q7Z3Y9 468 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 BCL11AQ9H165 835 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 PCDHAC2Q9Y5I4 1007 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 ECM29Q5VYK3 1845 aa18.18■□□□□ 0.5
USP4-212ENST00000486549 ADM5C9JUS6 153 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 WNT10BO00744 389 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 HSPA1AP0DMV8 641 aaKnown RBP18.17■□□□□ 0.5
USP4-212ENST00000486549 HSPA1BP0DMV9 641 aaKnown RBP18.17■□□□□ 0.5
USP4-212ENST00000486549 DLGAP5Q15398 846 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 CFAP100Q494V2 611 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 HSP90AB4PQ58FF6 505 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 DLK2Q6UY11 383 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 ERC1Q8IUD2 1116 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 WDR66Q8TBY9 1149 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 AIDAQ96BJ3 306 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 ZNF408Q9H9D4 720 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 GPR108Q9NPR9 543 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 DENND2AQ9ULE3 1009 aa18.17■□□□□ 0.5
USP4-212ENST00000486549 SCAF8Q9UPN6 1271 aaKnown RBP18.17■□□□□ 0.5
USP4-212ENST00000486549 SEMA3EO15041 775 aa18.16■□□□□ 0.5
USP4-212ENST00000486549 VEGFBP49765 207 aa18.16■□□□□ 0.5
USP4-212ENST00000486549 RASGRF1Q13972 1273 aa18.16■□□□□ 0.5
USP4-212ENST00000486549 SULF1Q8IWU6 871 aa18.16■□□□□ 0.5
USP4-212ENST00000486549 DBNDD2Q9BQY9 259 aa18.16■□□□□ 0.5
USP4-212ENST00000486549 HHIPL1Q96JK4 782 aa18.15■□□□□ 0.5
USP4-212ENST00000486549 CCDC8Q9H0W5 538 aaPredicted RBP18.15■□□□□ 0.5
USP4-212ENST00000486549 IL1RAPL2Q9NP60 686 aa18.15■□□□□ 0.5
USP4-212ENST00000486549 SUPT16HQ9Y5B9 1047 aaKnown RBP18.15■□□□□ 0.5
USP4-212ENST00000486549 CELF2O95319 508 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms