RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 EIF1AYO14602 144 aaKnown RBP7.5□□□□□ -1.21
VPS41-213ENST00000485955 CPNE3O75131 537 aaKnown RBP7.5□□□□□ -1.21
VPS41-213ENST00000485955 NEFLP07196 543 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 PIP4K2BP78356 416 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 SPRED3Q2MJR0 410 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 KIAA1211Q6ZU35 1233 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 CCNJLQ8IV13 435 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 UBASH3BQ8TF42 649 aa7.5□□□□□ -1.21
VPS41-213ENST00000485955 KCNA1Q09470 495 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 IKBKEQ14164 716 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 DUOXA2Q1HG44 320 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 DCAF11Q8TEB1 546 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 WNT8BQ93098 351 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 CCDC74AQ96AQ1 378 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 DMRTB1Q96MA1 342 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 UBL7Q96S82 380 aaPredicted RBP7.49□□□□□ -1.21
VPS41-213ENST00000485955 LIN7BQ9HAP6 207 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 NPHS2Q9NP85 383 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 OSGEPQ9NPF4 335 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 DCTN4Q9UJW0 460 aa7.49□□□□□ -1.21
VPS41-213ENST00000485955 H2AFB1P0C5Y9 115 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 H2AFB2P0C5Z0 115 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 ESRRAP11474 423 aaPredicted RBP7.48□□□□□ -1.21
VPS41-213ENST00000485955 NLRP12P59046 1061 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 KIAA0319Q5VV43 1072 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 Q6ZS46 218 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 ACAD11Q709F0 780 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 ALKBH8Q96BT7 664 aaKnown RBP7.48□□□□□ -1.21
VPS41-213ENST00000485955 CSRNP1Q96S65 589 aa7.48□□□□□ -1.21
VPS41-213ENST00000485955 A0A096LPE4 126 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 A0A1W2PPZ6 126 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 GLB1P16278 677 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 MAPK1P28482 360 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 C19orf57Q0VDD7 668 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 DSC3Q14574 896 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 EPS8L3Q8TE67 593 aaKnown RBP7.47□□□□□ -1.21
VPS41-213ENST00000485955 DNAJC25Q9H1X3 360 aa7.47□□□□□ -1.21
VPS41-213ENST00000485955 ZNF423Q2M1K9 1284 aa7.46□□□□□ -1.22
VPS41-213ENST00000485955 PRSS36Q5K4E3 855 aa7.46□□□□□ -1.22
VPS41-213ENST00000485955 EHD4Q9H223 541 aa7.46□□□□□ -1.22
VPS41-213ENST00000485955 DLGAP3O95886 979 aa7.45□□□□□ -1.22
VPS41-213ENST00000485955 ARL4DP49703 201 aa7.45□□□□□ -1.22
VPS41-213ENST00000485955 PI16Q6UXB8 463 aa7.45□□□□□ -1.22
VPS41-213ENST00000485955 TREHO43280 583 aa7.44□□□□□ -1.22
VPS41-213ENST00000485955 PLCB3Q01970 1234 aa7.44□□□□□ -1.22
VPS41-213ENST00000485955 PCDH1Q08174 1060 aa7.44□□□□□ -1.22
VPS41-213ENST00000485955 GLIS3Q8NEA6 775 aa7.44□□□□□ -1.22
VPS41-213ENST00000485955 CLEC4MQ9H2X3 399 aaPredicted RBP7.44□□□□□ -1.22
VPS41-213ENST00000485955 GSTM4Q03013 218 aa7.43□□□□□ -1.22
VPS41-213ENST00000485955 GRM2Q14416 872 aa7.43□□□□□ -1.22
VPS41-213ENST00000485955 PRR23CQ6ZRP0 262 aa7.43□□□□□ -1.22
VPS41-213ENST00000485955 ARMC10Q8N2F6 343 aa7.43□□□□□ -1.22
VPS41-213ENST00000485955 SOX17Q9H6I2 414 aaPredicted RBP7.43□□□□□ -1.22
VPS41-213ENST00000485955 ABCB6Q9NP58 842 aa7.43□□□□□ -1.22
VPS41-213ENST00000485955 LOC100289279A0A1B0GTE1 492 aa7.42□□□□□ -1.22
VPS41-213ENST00000485955 GADD45BO75293 160 aaPredicted RBP7.42□□□□□ -1.22
VPS41-213ENST00000485955 ITPKAP23677 461 aa7.42□□□□□ -1.22
VPS41-213ENST00000485955 USP26Q9BXU7 913 aa7.42□□□□□ -1.22
VPS41-213ENST00000485955 NRSN2Q9GZP1 204 aa7.42□□□□□ -1.22
VPS41-213ENST00000485955 ENOX2Q16206 610 aaKnown RBP7.41□□□□□ -1.22
VPS41-213ENST00000485955 AEBP1Q8IUX7 1158 aa7.41□□□□□ -1.22
VPS41-213ENST00000485955 FAM46AQ96IP4 442 aaKnown RBP7.41□□□□□ -1.22
VPS41-213ENST00000485955 SETDB2Q96T68 719 aa7.41□□□□□ -1.22
VPS41-213ENST00000485955 RUSC1Q9BVN2 902 aa7.41□□□□□ -1.22
VPS41-213ENST00000485955 ZNF576Q9H609 170 aa7.41□□□□□ -1.22
VPS41-213ENST00000485955 PNMA6FA0A0J9YX94 578 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 TMEM238LA0A1B0GVL6 79 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 MEGF11A6BM72 1044 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 CTSBP07858 339 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 PRPF40BQ6NWY9 871 aaKnown RBP7.4□□□□□ -1.22
VPS41-213ENST00000485955 ASB16Q96NS5 453 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 CEP41Q9BYV8 373 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 RNF208Q9H0X6 261 aa7.4□□□□□ -1.22
VPS41-213ENST00000485955 B3GALT4O96024 378 aa7.39□□□□□ -1.23
VPS41-213ENST00000485955 PDIA4P13667 645 aaKnown RBP7.39□□□□□ -1.23
VPS41-213ENST00000485955 PREPP48147 710 aa7.39□□□□□ -1.23
VPS41-213ENST00000485955 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS41-213ENST00000485955 TRIM56Q9BRZ2 755 aaKnown RBP7.39□□□□□ -1.23
VPS41-213ENST00000485955 TMPRSS13Q9BYE2 586 aa7.39□□□□□ -1.23
VPS41-213ENST00000485955 WWC3Q9ULE0 1092 aa7.39□□□□□ -1.23
VPS41-213ENST00000485955 ECEL1O95672 775 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 DRD2P14416 443 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 MAOBP27338 520 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 MAPK8P45983 427 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 ZNF157P51786 506 aaPredicted RBP7.38□□□□□ -1.23
VPS41-213ENST00000485955 FMR1Q06787 632 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS41-213ENST00000485955 FAAP100Q0VG06 881 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 ZMYM1Q5SVZ6 1142 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 ANKRD34AQ69YU3 496 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 ZSCAN29Q8IWY8 852 aaPredicted RBP7.38□□□□□ -1.23
VPS41-213ENST00000485955 UTP4Q969X6 686 aaKnown RBP7.38□□□□□ -1.23
VPS41-213ENST00000485955 BCO2Q9BYV7 579 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 NLRP2Q9NX02 1062 aa7.38□□□□□ -1.23
VPS41-213ENST00000485955 FCGRTP55899 365 aa7.37□□□□□ -1.23
VPS41-213ENST00000485955 PTPN12Q05209 780 aaKnown RBP7.37□□□□□ -1.23
VPS41-213ENST00000485955 EXOSC6Q5RKV6 272 aaKnown RBP7.37□□□□□ -1.23
VPS41-213ENST00000485955 NUTM2GQ5VZR2 741 aa7.37□□□□□ -1.23
VPS41-213ENST00000485955 NXPE4Q6UWF7 544 aa7.37□□□□□ -1.23
VPS41-213ENST00000485955 C12orf50Q8NA57 414 aaPredicted RBP7.37□□□□□ -1.23
VPS41-213ENST00000485955 MYRFLQ96LU7 910 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms