RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TMEM57Q8N5G2 664 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 TBC1D16Q8TBP0 767 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 ZNF594Q96JF6 807 aaPredicted RBP9.97□□□□□ -0.81
USP40-216ENST00000485943 USP44Q9H0E7 712 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 BCL11AQ9H165 835 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 HACL1Q9UJ83 578 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 MINPP1Q9UNW1 487 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 ZNF804BA4D1E1 1349 aa9.97□□□□□ -0.81
USP40-216ENST00000485943 SRGAP3O43295 1099 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 FOXO4P98177 505 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 PNMA8AQ86V59 439 aaPredicted RBP9.96□□□□□ -0.82
USP40-216ENST00000485943 OGFOD1Q8N543 542 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 HELBQ8NG08 1087 aaPredicted RBP9.96□□□□□ -0.82
USP40-216ENST00000485943 MEIS3Q99687 375 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 NMRK2Q9NPI5 230 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 CEP126Q9P2H0 1117 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 METRNQ9UJH8 293 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 HDAC9Q9UKV0 1011 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 DDX19BQ9UMR2 479 aa9.96□□□□□ -0.82
USP40-216ENST00000485943 HMMRO75330 724 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 TAF5LO75529 589 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 SLC5A1P13866 664 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 CASP7P55210 303 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 SMC1BQ8NDV3 1235 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 OXER1Q8TDS5 423 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 GPR101Q96P66 508 aaPredicted RBP9.95□□□□□ -0.82
USP40-216ENST00000485943 RTFDC1Q9BY42 306 aaPredicted RBP9.95□□□□□ -0.82
USP40-216ENST00000485943 GNL3LQ9NVN8 582 aaKnown RBP9.95□□□□□ -0.82
USP40-216ENST00000485943 PODXL2Q9NZ53 605 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 POLLQ9UGP5 575 aa9.95□□□□□ -0.82
USP40-216ENST00000485943 UTYO14607 1347 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 ZNF541Q9H0D2 1346 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 TOMM70O94826 608 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 EPHA10Q5JZY3 1008 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 PODNQ7Z5L7 613 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 GPIHBP1Q8IV16 184 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 PANK1Q8TE04 598 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 COA1Q9GZY4 146 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 UTRNP46939 3433 aa9.94□□□□□ -0.82
USP40-216ENST00000485943 LRRC37AA6NMS7 1700 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 MED23Q9ULK4 1368 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 USP17L3A6NCW0 530 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 USP17L4A6NCW7 530 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 FZD9O00144 591 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 EPHX2P34913 555 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 RBM5P52756 815 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP40-216ENST00000485943 UBE4AQ14139 1066 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 PUM3Q15397 648 aaKnown RBP9.93□□□□□ -0.82
USP40-216ENST00000485943 USP17L1Q7RTZ2 530 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 AKAP2Q9Y2D5 859 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 COG6Q9Y2V7 657 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 SCN4AP35499 1836 aa9.93□□□□□ -0.82
USP40-216ENST00000485943 MYO3BQ8WXR4 1341 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 EYA2O00167 538 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 PSMD14O00487 310 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 GPR37O15354 613 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 RPS12P25398 132 aaKnown RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 HIBADHP31937 336 aaKnown RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 IL15P40933 162 aaPredicted RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 GMPSP49915 693 aaPredicted RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 CXCL9Q07325 125 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 MVPQ14764 893 aaKnown RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 RABL6Q3YEC7 729 aaPredicted RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 HSP90AB4PQ58FF6 505 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 TTLL5Q6EMB2 1281 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 KLHDC4Q8TBB5 520 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 RBM46Q8TBY0 533 aaKnown RBP9.92□□□□□ -0.82
USP40-216ENST00000485943 NEUROD6Q96NK8 337 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 C1orf115Q9H7X2 142 aa9.92□□□□□ -0.82
USP40-216ENST00000485943 MYO1BO43795 1136 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 SURF6O75683 361 aaKnown RBP9.91□□□□□ -0.82
USP40-216ENST00000485943 C1QTNF8P60827 252 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 GTF2IP78347 998 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 MAP3K9P80192 1104 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 CHAF1AQ13111 956 aaPredicted RBP9.91□□□□□ -0.82
USP40-216ENST00000485943 TMEM132AQ24JP5 1023 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 LDHDQ86WU2 507 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 ANKRD44Q8N8A2 993 aa9.91□□□□□ -0.82
USP40-216ENST00000485943 ADARB2Q9NS39 739 aaKnown RBP9.91□□□□□ -0.82
USP40-216ENST00000485943 CNOT7Q9UIV1 285 aaKnown RBP9.91□□□□□ -0.82
USP40-216ENST00000485943 CIAO1O76071 339 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 PDE8BO95263 885 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 PRELPP51888 382 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 FSTL1Q12841 308 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 PDE3AQ14432 1141 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 ATP2B3Q16720 1220 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 LRRC24Q50LG9 513 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 USP50Q70EL3 339 aaPredicted RBP9.9□□□□□ -0.82
USP40-216ENST00000485943 SLC51AQ86UW1 340 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 ERC1Q8IUD2 1116 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 LPIN2Q92539 896 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 DCPSQ96C86 337 aaKnown RBP9.9□□□□□ -0.82
USP40-216ENST00000485943 PUS3Q9BZE2 481 aaKnown RBP9.9□□□□□ -0.82
USP40-216ENST00000485943 TAF1DQ9H5J8 278 aaPredicted RBP9.9□□□□□ -0.82
USP40-216ENST00000485943 TNNQ9UQP3 1299 aa9.9□□□□□ -0.82
USP40-216ENST00000485943 WDR90Q96KV7 1748 aa9.9□□□□□ -0.83
USP40-216ENST00000485943 F8W031 263 aaPredicted RBP9.89□□□□□ -0.83
USP40-216ENST00000485943 APBB1O00213 710 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 USP17L8P0C7I0 530 aa9.89□□□□□ -0.83
USP40-216ENST00000485943 GYG1P46976 350 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms