RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 ZIC5Q96T25 663 aa18.69■□□□□ 0.58
LIMS3-204ENST00000482065 PCDHAC2Q9Y5I4 1007 aa18.69■□□□□ 0.58
LIMS3-204ENST00000482065 HIBADHP31937 336 aaKnown RBP18.68■□□□□ 0.58
LIMS3-204ENST00000482065 RFX5P48382 616 aaPredicted RBP18.68■□□□□ 0.58
LIMS3-204ENST00000482065 MMP14P50281 582 aa18.68■□□□□ 0.58
LIMS3-204ENST00000482065 RGMBQ6NW40 437 aa18.68■□□□□ 0.58
LIMS3-204ENST00000482065 ZBED3Q96IU2 234 aaPredicted RBP18.68■□□□□ 0.58
LIMS3-204ENST00000482065 FAM84BQ96KN1 310 aaPredicted RBP18.68■□□□□ 0.58
LIMS3-204ENST00000482065 PRDM10Q9NQV6 1147 aa18.68■□□□□ 0.58
LIMS3-204ENST00000482065 UBTFL1P0CB47 393 aaPredicted RBP18.67■□□□□ 0.58
LIMS3-204ENST00000482065 VGLL2Q8N8G2 317 aa18.67■□□□□ 0.58
LIMS3-204ENST00000482065 TDRD7Q8NHU6 1098 aaKnown RBP18.67■□□□□ 0.58
LIMS3-204ENST00000482065 BEGAINQ9BUH8 593 aa18.67■□□□□ 0.58
LIMS3-204ENST00000482065 PAPPA2Q9BXP8 1791 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 FAM155AB1AL88 458 aaPredicted RBP18.66■□□□□ 0.58
LIMS3-204ENST00000482065 ZNF157P51786 506 aaPredicted RBP18.66■□□□□ 0.58
LIMS3-204ENST00000482065 FKBP1AP62942 108 aaKnown RBP18.66■□□□□ 0.58
LIMS3-204ENST00000482065 HNRNPUQ00839 825 aaKnown RBP eCLIP18.66■□□□□ 0.58
LIMS3-204ENST00000482065 NOGQ13253 232 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 DLGAP5Q15398 846 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 MOB2Q70IA6 237 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 TSKSQ9UJT2 592 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 FAM205AQ6ZU69 1335 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 KIF16BQ96L93 1317 aa18.66■□□□□ 0.58
LIMS3-204ENST00000482065 PDE8BO95263 885 aa18.65■□□□□ 0.58
LIMS3-204ENST00000482065 PTPN12Q05209 780 aaKnown RBP18.65■□□□□ 0.58
LIMS3-204ENST00000482065 CFAP100Q494V2 611 aa18.65■□□□□ 0.58
LIMS3-204ENST00000482065 MEIS3Q99687 375 aa18.65■□□□□ 0.58
LIMS3-204ENST00000482065 IQSEC3Q9UPP2 1182 aaPredicted RBP18.65■□□□□ 0.58
LIMS3-204ENST00000482065 LRRFIP2Q9Y608 721 aaKnown RBP18.65■□□□□ 0.58
LIMS3-204ENST00000482065 EYA2O00167 538 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 MFSD14BQ5SR56 506 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 FBXO33Q7Z6M2 555 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 VPS37DQ86XT2 251 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 APOBEC3FQ8IUX4 373 aaKnown RBP18.64■□□□□ 0.57
LIMS3-204ENST00000482065 MTMR14Q8NCE2 650 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 TNNQ9UQP3 1299 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 AOX1Q06278 1338 aa18.64■□□□□ 0.57
LIMS3-204ENST00000482065 CAPN15O75808 1086 aa18.63■□□□□ 0.57
LIMS3-204ENST00000482065 BCAR3O75815 825 aa18.63■□□□□ 0.57
LIMS3-204ENST00000482065 ARHGAP45Q92619 1136 aa18.63■□□□□ 0.57
LIMS3-204ENST00000482065 CCDC102AQ96A19 550 aa18.63■□□□□ 0.57
LIMS3-204ENST00000482065 ARAP2Q8WZ64 1704 aa18.63■□□□□ 0.57
LIMS3-204ENST00000482065 CLRN2A0PK11 232 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 SPDYE2BA6NHP3 402 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 UBE2Q2LH0YL09 131 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 SLC10A3P09131 477 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 SPDYE6P0CI01 402 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 FKBP1BP68106 108 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 CHAF1AQ13111 956 aaPredicted RBP18.62■□□□□ 0.57
LIMS3-204ENST00000482065 TTLL12Q14166 644 aaPredicted RBP18.62■□□□□ 0.57
LIMS3-204ENST00000482065 INTS3Q68E01 1043 aaKnown RBP18.62■□□□□ 0.57
LIMS3-204ENST00000482065 RASAL3Q86YV0 1011 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 PRMT6Q96LA8 375 aaPredicted RBP18.62■□□□□ 0.57
LIMS3-204ENST00000482065 SIL1Q9H173 461 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 ECM29Q5VYK3 1845 aa18.62■□□□□ 0.57
LIMS3-204ENST00000482065 TRIM27P14373 513 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 FGFR2P21802 821 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 BCAMP50895 628 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 RBM5P52756 815 aaKnown RBP eCLIP18.61■□□□□ 0.57
LIMS3-204ENST00000482065 KIF23Q02241 960 aaPredicted RBP18.61■□□□□ 0.57
LIMS3-204ENST00000482065 PUM3Q15397 648 aaKnown RBP18.61■□□□□ 0.57
LIMS3-204ENST00000482065 GRIK5Q16478 980 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 CAVIN4Q5BKX8 364 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 ATG9AQ7Z3C6 839 aa18.61■□□□□ 0.57
LIMS3-204ENST00000482065 FRAT1Q92837 279 aaPredicted RBP18.61■□□□□ 0.57
LIMS3-204ENST00000482065 TTF2Q9UNY4 1162 aaKnown RBP18.61■□□□□ 0.57
LIMS3-204ENST00000482065 FRAT2O75474 233 aaPredicted RBP18.6■□□□□ 0.57
LIMS3-204ENST00000482065 IFIT1P09914 478 aaKnown RBP18.6■□□□□ 0.57
LIMS3-204ENST00000482065 NF2P35240 595 aa18.6■□□□□ 0.57
LIMS3-204ENST00000482065 PRKG1Q13976 671 aa18.6■□□□□ 0.57
LIMS3-204ENST00000482065 DEFB129Q9H1M3 183 aa18.6■□□□□ 0.57
LIMS3-204ENST00000482065 VEZTQ9HBM0 779 aa18.6■□□□□ 0.57
LIMS3-204ENST00000482065 PA2G4Q9UQ80 394 aaKnown RBP18.6■□□□□ 0.57
LIMS3-204ENST00000482065 ATF7IPQ6VMQ6 1270 aa18.59■□□□□ 0.57
LIMS3-204ENST00000482065 COL1A1P02452 1464 aaPredicted RBP18.58■□□□□ 0.57
LIMS3-204ENST00000482065 IPO8O15397 1037 aaKnown RBP18.58■□□□□ 0.56
LIMS3-204ENST00000482065 CA12O43570 354 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 MYO1BO43795 1136 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 SLC5A1P13866 664 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 LPIN2Q92539 896 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 CLUAP1Q96AJ1 413 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 FZD1Q9UP38 647 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 HDAC5Q9UQL6 1122 aa18.58■□□□□ 0.56
LIMS3-204ENST00000482065 SSC5DA1L4H1 1573 aa18.57■□□□□ 0.56
LIMS3-204ENST00000482065 CIAO1O76071 339 aa18.57■□□□□ 0.56
LIMS3-204ENST00000482065 GNAI3P08754 354 aa18.57■□□□□ 0.56
LIMS3-204ENST00000482065 CRKP46108 304 aa18.57■□□□□ 0.56
LIMS3-204ENST00000482065 SERPINA10Q9UK55 444 aa18.57■□□□□ 0.56
LIMS3-204ENST00000482065 ARMC9Q7Z3E5 817 aa18.56■□□□□ 0.56
LIMS3-204ENST00000482065 TBC1D22AQ8WUA7 517 aa18.56■□□□□ 0.56
LIMS3-204ENST00000482065 CSRNP1Q96S65 589 aa18.56■□□□□ 0.56
LIMS3-204ENST00000482065 TDRD3Q9H7E2 651 aaKnown RBP18.56■□□□□ 0.56
LIMS3-204ENST00000482065 CEP126Q9P2H0 1117 aa18.56■□□□□ 0.56
LIMS3-204ENST00000482065 FBXO3Q9UK99 471 aa18.56■□□□□ 0.56
LIMS3-204ENST00000482065 ANGEL1Q9UNK9 670 aaKnown RBP18.56■□□□□ 0.56
LIMS3-204ENST00000482065 CASP8AP2Q9UKL3 1982 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 ATP2B3Q16720 1220 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 SPDYE2Q495Y8 402 aa18.55■□□□□ 0.56
LIMS3-204ENST00000482065 DZIP1LQ8IYY4 767 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms