RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MYH13Q9UKX3 1938 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 SALL1Q9NSC2 1324 aa12.3□□□□□ -0.44
USP39-215ENST00000481409 FRAT2O75474 233 aaPredicted RBP12.29□□□□□ -0.44
USP39-215ENST00000481409 CHMLP26374 656 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 GYG1P46976 350 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 MFAP1P55081 439 aaKnown RBP12.29□□□□□ -0.44
USP39-215ENST00000481409 RASGRF1Q13972 1273 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 WASHC4Q2M389 1173 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 SPTY2D1Q68D10 685 aaPredicted RBP12.29□□□□□ -0.44
USP39-215ENST00000481409 PODNQ7Z5L7 613 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 TBC1D22AQ8WUA7 517 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 DNAJC2Q99543 621 aaKnown RBP12.29□□□□□ -0.44
USP39-215ENST00000481409 DIAPH3Q9NSV4 1193 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 HMG20BQ9P0W2 317 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 SUGT1Q9Y2Z0 365 aa12.29□□□□□ -0.44
USP39-215ENST00000481409 ARFGEF1Q9Y6D6 1849 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 SNAP23O00161 211 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 GOLIM4O00461 696 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 ZAP70P43403 619 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 MAP3K12Q12852 859 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 IL27Q8NEV9 243 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 CD209Q9NNX6 404 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 SNRKQ9NRH2 765 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 HELLSQ9NRZ9 838 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 LTBP3Q9NS15 1303 aa12.28□□□□□ -0.44
USP39-215ENST00000481409 DOCK2Q92608 1830 aa12.27□□□□□ -0.44
USP39-215ENST00000481409 MYH7P12883 1935 aa12.27□□□□□ -0.44
USP39-215ENST00000481409 C21orf2O43822 256 aa12.27□□□□□ -0.45
USP39-215ENST00000481409 CYP2E1P05181 493 aaPredicted RBP12.27□□□□□ -0.45
USP39-215ENST00000481409 FKBP1AP62942 108 aaKnown RBP12.27□□□□□ -0.45
USP39-215ENST00000481409 KIAA2012Q0VF49 1180 aa12.27□□□□□ -0.45
USP39-215ENST00000481409 UBE3CQ15386 1083 aa12.27□□□□□ -0.45
USP39-215ENST00000481409 PPP1R1BQ9UD71 204 aaPredicted RBP12.27□□□□□ -0.45
USP39-215ENST00000481409 FAM205AQ6ZU69 1335 aa12.27□□□□□ -0.45
USP39-215ENST00000481409 G3V3G9 751 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 RNF113AO15541 343 aaKnown RBP12.26□□□□□ -0.45
USP39-215ENST00000481409 SCARF1Q14162 830 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 DCAF8Q5TAQ9 597 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 TXNRD3Q86VQ6 643 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 CERS3Q8IU89 383 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 ESYT1Q9BSJ8 1104 aa12.26□□□□□ -0.45
USP39-215ENST00000481409 FER1L6Q2WGJ9 1857 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 SGSM2O43147 1006 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 MAP4K4O95819 1239 aaPredicted RBP12.25□□□□□ -0.45
USP39-215ENST00000481409 MMP14P50281 582 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 MCMDC2Q4G0Z9 681 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 ZMYM1Q5SVZ6 1142 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 SLF2Q8IX21 1173 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 APPBP2Q92624 585 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 LRP2BPQ9P2M1 347 aa12.25□□□□□ -0.45
USP39-215ENST00000481409 KLRK1P26718 216 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 ADD2P35612 726 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 GSTO1P78417 241 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 CCDC88AQ3V6T2 1871 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 KIAA1211Q6ZU35 1233 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 ERICH6Q7L0X2 663 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 FHDC1Q9C0D6 1143 aaPredicted RBP12.24□□□□□ -0.45
USP39-215ENST00000481409 TAOK3Q9H2K8 898 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 ANTXR1Q9H6X2 564 aa12.24□□□□□ -0.45
USP39-215ENST00000481409 MAST2Q6P0Q8 1798 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 MAST3O60307 1309 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 WTIPA6NIX2 430 aaPredicted RBP12.23□□□□□ -0.45
USP39-215ENST00000481409 IDH1O75874 414 aaKnown RBP12.23□□□□□ -0.45
USP39-215ENST00000481409 SLC9C2Q5TAH2 1124 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 STRIP1Q5VSL9 837 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 CWC27Q6UX04 472 aaKnown RBP12.23□□□□□ -0.45
USP39-215ENST00000481409 KLHL34Q8N239 644 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 EDC3Q96F86 508 aaKnown RBP12.23□□□□□ -0.45
USP39-215ENST00000481409 MRIQ9BWK5 157 aa12.23□□□□□ -0.45
USP39-215ENST00000481409 PIH1D3Q9NQM4 214 aaKnown RBP12.23□□□□□ -0.45
USP39-215ENST00000481409 COL1A1P02452 1464 aaPredicted RBP12.22□□□□□ -0.45
USP39-215ENST00000481409 RPAP1Q9BWH6 1393 aaPredicted RBP12.22□□□□□ -0.45
USP39-215ENST00000481409 MYO3BQ8WXR4 1341 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 PPIP5K2O43314 1243 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 LDHBP07195 334 aaKnown RBP12.22□□□□□ -0.45
USP39-215ENST00000481409 LDHCP07864 332 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 GNAT2P19087 354 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 MCCP23508 829 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 IARSP41252 1262 aaKnown RBP12.22□□□□□ -0.45
USP39-215ENST00000481409 NMIQ13287 307 aaPredicted RBP12.22□□□□□ -0.45
USP39-215ENST00000481409 OLFM4Q6UX06 510 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 PI16Q6UXB8 463 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 SYT17Q9BSW7 474 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 BCS1LQ9Y276 419 aa12.22□□□□□ -0.45
USP39-215ENST00000481409 PSME4Q14997 1843 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 RIMBP2O15034 1052 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 ECE2O60344 883 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 PDE6AP16499 860 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 RBM25P49756 843 aaKnown RBP12.21□□□□□ -0.45
USP39-215ENST00000481409 TTLL5Q6EMB2 1281 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 FAM163AQ96GL9 167 aaPredicted RBP12.21□□□□□ -0.45
USP39-215ENST00000481409 DSCC1Q9BVC3 393 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 RAI14Q9P0K7 980 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 ABCF2Q9UG63 623 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 NDUFB9Q9Y6M9 179 aa12.21□□□□□ -0.45
USP39-215ENST00000481409 CHD4Q14839 1912 aa12.21□□□□□ -0.46
USP39-215ENST00000481409 CCDC171Q6TFL3 1326 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 ZNF532Q9HCE3 1301 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 TCRBV5S4A2TA0A5A2 114 aa12.2□□□□□ -0.46
USP39-215ENST00000481409 USP17L3A6NCW0 530 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms