RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 NAA16Q6N069 864 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-212ENST00000477970 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.43□□□□□ -0.1
PTPRF-212ENST00000477970 A0A1B0GUL6 1792 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 FOXP2O15409 715 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 LDHAL6AQ6ZMR3 332 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 TCEANC2Q96MN5 208 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 FUCA2Q9BTY2 467 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 KIF3AQ9Y496 699 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 ZMYM6O95789 1325 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 FIBPO43427 364 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 PDE8BO95263 885 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 HSP90B1P14625 803 aaKnown RBP14.43□□□□□ -0.1
PTPRF-212ENST00000477970 FGFR2P21802 821 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 SCRN1Q12765 414 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 PARP10Q53GL7 1025 aa14.43□□□□□ -0.1
PTPRF-212ENST00000477970 INTS5Q6P9B9 1019 aaKnown RBP14.43□□□□□ -0.1
PTPRF-212ENST00000477970 TRMT112Q9UI30 125 aaKnown RBP14.43□□□□□ -0.1
PTPRF-212ENST00000477970 UQCRFS1P1P0C7P4 283 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 HMGB2P26583 209 aaKnown RBP14.42□□□□□ -0.1
PTPRF-212ENST00000477970 ATL3Q6DD88 541 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 ZSCAN30Q86W11 494 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 CCDC87Q9NVE4 849 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 ZNF330Q9Y3S2 320 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-212ENST00000477970 TIAM2Q8IVF5 1701 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 RESTQ13127 1097 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 UBE3CQ15386 1083 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 BRF1Q92994 677 aa14.42□□□□□ -0.1
PTPRF-212ENST00000477970 KCNQ2O43526 872 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 ZAP70P43403 619 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 FKBP4Q02790 459 aaKnown RBP eCLIP14.41□□□□□ -0.1
PTPRF-212ENST00000477970 PTF1AQ7RTS3 328 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 NSUN7Q8NE18 718 aaKnown RBP14.41□□□□□ -0.1
PTPRF-212ENST00000477970 C4AP0C0L4 1744 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 C4BP0C0L5 1744 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 MCM5P33992 734 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 ADD2P35612 726 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 SCARF1Q14162 830 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 IMMTQ16891 758 aaKnown RBP14.41□□□□□ -0.1
PTPRF-212ENST00000477970 SCN7AQ01118 1682 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 MCAMP43121 646 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 PUM3Q15397 648 aaKnown RBP14.41□□□□□ -0.1
PTPRF-212ENST00000477970 SLC27A3Q5K4L6 730 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 TTC6Q86TZ1 520 aa14.41□□□□□ -0.1
PTPRF-212ENST00000477970 KAT6BQ8WYB5 2073 aa14.4□□□□□ -0.1
PTPRF-212ENST00000477970 GPTP24298 496 aa14.4□□□□□ -0.1
PTPRF-212ENST00000477970 LPIN2Q92539 896 aa14.4□□□□□ -0.1
PTPRF-212ENST00000477970 FOXD4L6Q3SYB3 417 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-212ENST00000477970 FOXD4L3Q6VB84 417 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-212ENST00000477970 CNNM1Q9NRU3 951 aa14.4□□□□□ -0.1
PTPRF-212ENST00000477970 MYH14Q7Z406 1995 aaKnown RBP14.4□□□□□ -0.1
PTPRF-212ENST00000477970 CAMTA2O94983 1202 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 STK3Q13188 491 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 SLFNL1Q499Z3 407 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 MB21D2Q8IYB1 491 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-212ENST00000477970 SYNE4Q8N205 404 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 PROM2Q8N271 834 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 SMARCC1Q92922 1105 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-212ENST00000477970 NOL7Q9UMY1 257 aaKnown RBP14.39□□□□□ -0.11
PTPRF-212ENST00000477970 UBR3Q6ZT12 1888 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 JAK2O60674 1132 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 CTDNEP1O95476 244 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 RBM43Q6ZSC3 357 aaKnown RBP14.39□□□□□ -0.11
PTPRF-212ENST00000477970 ACSBG1Q96GR2 724 aa14.39□□□□□ -0.11
PTPRF-212ENST00000477970 MYO5AQ9Y4I1 1855 aaKnown RBP14.39□□□□□ -0.11
PTPRF-212ENST00000477970 PDIA3P30101 505 aaKnown RBP14.38□□□□□ -0.11
PTPRF-212ENST00000477970 ALX1Q15699 326 aa14.38□□□□□ -0.11
PTPRF-212ENST00000477970 LEO1Q8WVC0 666 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-212ENST00000477970 UTP14AQ9BVJ6 771 aaKnown RBP14.38□□□□□ -0.11
PTPRF-212ENST00000477970 CCDC39Q9UFE4 941 aa14.38□□□□□ -0.11
PTPRF-212ENST00000477970 CFAP45Q9UL16 551 aa14.38□□□□□ -0.11
PTPRF-212ENST00000477970 FGAP02671 866 aa14.38□□□□□ -0.11
PTPRF-212ENST00000477970 CRKLP46109 303 aaKnown RBP14.38□□□□□ -0.11
PTPRF-212ENST00000477970 TXNRD1Q16881 649 aa14.38□□□□□ -0.11
PTPRF-212ENST00000477970 PUS7LQ9H0K6 701 aaKnown RBP14.38□□□□□ -0.11
PTPRF-212ENST00000477970 LOC102724428A0A0B4J2F2 783 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 GPAA1O43292 621 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 SIK1P57059 783 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 FGD1P98174 961 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 APOBRQ0VD83 1088 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 WASHC4Q2M389 1173 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 CCDC102BQ68D86 513 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 DDX19AQ9NUU7 478 aaKnown RBP14.37□□□□□ -0.11
PTPRF-212ENST00000477970 CHD4Q14839 1912 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 TCRBV5S4A2TA0A5A2 114 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 PTPDC1A2A3K4 754 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 SUSD4Q5VX71 490 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 NCOA7Q8NI08 942 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 SPATA32Q96LK8 384 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 TBC1D2BQ9UPU7 963 aa14.37□□□□□ -0.11
PTPRF-212ENST00000477970 SYTL4Q96C24 671 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-212ENST00000477970 SLC5A1P13866 664 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 CCDC85AQ96PX6 553 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-212ENST00000477970 H3BQV1 296 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 ZNF500O60304 480 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-212ENST00000477970 NTSR2O95665 410 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 ATP6V1AP38606 617 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 IFFO2Q5TF58 517 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 CLEC4GQ6UXB4 293 aa14.36□□□□□ -0.11
PTPRF-212ENST00000477970 CARMIL3Q8ND23 1372 aa14.35□□□□□ -0.11
PTPRF-212ENST00000477970 A0A0G2JLW4 131 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms