RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SOX13Q9UN79 622 aa8.21□□□□□ -1.1
VPS50-214ENST00000477935 ZNF608Q9ULD9 1512 aaPredicted RBP8.2□□□□□ -1.1
VPS50-214ENST00000477935 C9orf172C9J069 976 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 DLL1O00548 723 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 MSTNO14793 375 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 CABP4P57796 275 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 PLCB3Q01970 1234 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 HOMEZQ8IX15 550 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 BSNDQ8WZ55 320 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 LENG1Q96BZ8 264 aaPredicted RBP8.2□□□□□ -1.1
VPS50-214ENST00000477935 LIN7BQ9HAP6 207 aa8.2□□□□□ -1.1
VPS50-214ENST00000477935 H3BRJ5 948 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 FSCN2O14926 492 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 KIAA0319Q5VV43 1072 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 FAM117BQ6P1L5 589 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 IGF2-ASQ6U949 168 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 GALNT11Q8NCW6 608 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 TCF12Q99081 682 aa8.19□□□□□ -1.1
VPS50-214ENST00000477935 PNMA6FA0A0J9YX94 578 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 METTL12A8MUP2 240 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 NRG1Q02297 640 aaPredicted RBP8.18□□□□□ -1.1
VPS50-214ENST00000477935 FMR1Q06787 632 aaKnown RBP eCLIP8.18□□□□□ -1.14e-6■■■■□ 21.6
VPS50-214ENST00000477935 ADGRE1Q14246 886 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 ENOX2Q16206 610 aaKnown RBP8.18□□□□□ -1.1
VPS50-214ENST00000477935 CCNJLQ8IV13 435 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 EPS8L3Q8TE67 593 aaKnown RBP8.18□□□□□ -1.1
VPS50-214ENST00000477935 DCAF11Q8TEB1 546 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 CARD10Q9BWT7 1032 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 EHD4Q9H223 541 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 USP21Q9UK80 565 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 MROH2BQ7Z745 1585 aa8.18□□□□□ -1.1
VPS50-214ENST00000477935 TM4SF5O14894 197 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 MAPK8P45983 427 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 GRIA4P48058 902 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 PIP4K2BP78356 416 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 MBTPS1Q14703 1052 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 VN1R5Q7Z5H4 357 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 SEC31BQ9NQW1 1179 aa8.17□□□□□ -1.1
VPS50-214ENST00000477935 GADD45BO75293 160 aaPredicted RBP8.16□□□□□ -1.1
VPS50-214ENST00000477935 GATA4P43694 442 aa8.16□□□□□ -1.1
VPS50-214ENST00000477935 FOXD4L6Q3SYB3 417 aaPredicted RBP8.16□□□□□ -1.1
VPS50-214ENST00000477935 PI16Q6UXB8 463 aa8.16□□□□□ -1.1
VPS50-214ENST00000477935 FOXD4L3Q6VB84 417 aaPredicted RBP8.16□□□□□ -1.1
VPS50-214ENST00000477935 KLHL23Q8NBE8 558 aa8.16□□□□□ -1.1
VPS50-214ENST00000477935 WNT8BQ93098 351 aa8.16□□□□□ -1.1
VPS50-214ENST00000477935 GZF1Q9H116 711 aaPredicted RBP8.16□□□□□ -1.1
VPS50-214ENST00000477935 A0A096LPE4 126 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 A0A1W2PPZ6 126 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 CD68P34810 354 aaPredicted RBP8.15□□□□□ -1.1
VPS50-214ENST00000477935 IKBKEQ14164 716 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 SPRED3Q2MJR0 410 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 SLC7A3Q8WY07 619 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 KLHDC7BQ96G42 594 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 MRPL18Q9H0U6 180 aaKnown RBP8.15□□□□□ -1.1
VPS50-214ENST00000477935 NLRP2Q9NX02 1062 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 KCNK4Q9NYG8 393 aa8.15□□□□□ -1.1
VPS50-214ENST00000477935 SOX1O00570 391 aaPredicted RBP8.14□□□□□ -1.11
VPS50-214ENST00000477935 HGSNATQ68CP4 663 aa8.14□□□□□ -1.11
VPS50-214ENST00000477935 SETDB2Q96T68 719 aa8.14□□□□□ -1.11
VPS50-214ENST00000477935 ABCB6Q9NP58 842 aa8.14□□□□□ -1.11
VPS50-214ENST00000477935 OSGEPQ9NPF4 335 aa8.14□□□□□ -1.11
VPS50-214ENST00000477935 ADAM11O75078 769 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 P4HBP07237 508 aaKnown RBP8.13□□□□□ -1.11
VPS50-214ENST00000477935 ESRRAP11474 423 aaPredicted RBP8.13□□□□□ -1.11
VPS50-214ENST00000477935 GRM2Q14416 872 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 PRPF40BQ6NWY9 871 aaKnown RBP8.13□□□□□ -1.11
VPS50-214ENST00000477935 TXNRD3Q86VQ6 643 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 GLIS3Q8NEA6 775 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 WWC3Q9ULE0 1092 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 ABCC8Q09428 1581 aa8.13□□□□□ -1.11
VPS50-214ENST00000477935 ANKRD33BA6NCL7 494 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 DDX3YO15523 660 aaKnown RBP8.12□□□□□ -1.11
VPS50-214ENST00000477935 ITPKAP23677 461 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 IREB2P48200 963 aaKnown RBP8.12□□□□□ -1.11
VPS50-214ENST00000477935 ARL4DP49703 201 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 C19orf57Q0VDD7 668 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 SUZ12Q15022 739 aaKnown RBP8.12□□□□□ -1.11
VPS50-214ENST00000477935 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS50-214ENST00000477935 TMEM130Q8N3G9 435 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 FBF1Q8TES7 1133 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 WFDC12Q8WWY7 111 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 FOXD4L4Q8WXT5 416 aaPredicted RBP8.12□□□□□ -1.11
VPS50-214ENST00000477935 CLEC4MQ9H2X3 399 aaPredicted RBP8.12□□□□□ -1.11
VPS50-214ENST00000477935 TRAK1Q9UPV9 953 aa8.12□□□□□ -1.11
VPS50-214ENST00000477935 AQRO60306 1485 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS50-214ENST00000477935 WISP1O95388 367 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 NOS3P29474 1203 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 ATP2B2Q01814 1243 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 PCDH1Q08174 1060 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 ALG1LQ6GMV1 187 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 DNAJC14Q6Y2X3 702 aaPredicted RBP8.11□□□□□ -1.11
VPS50-214ENST00000477935 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.11□□□□□ -1.11
VPS50-214ENST00000477935 BCO2Q9BYV7 579 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 ZNF576Q9H609 170 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 SOX17Q9H6I2 414 aaPredicted RBP8.11□□□□□ -1.11
VPS50-214ENST00000477935 AKTIPQ9H8T0 292 aa8.11□□□□□ -1.11
VPS50-214ENST00000477935 TMEM238LA0A1B0GVL6 79 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 F8W735 103 aaPredicted RBP8.1□□□□□ -1.11
VPS50-214ENST00000477935 ALX3O95076 343 aa8.1□□□□□ -1.11
VPS50-214ENST00000477935 NLRP12P59046 1061 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms