RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 NPHP3Q7Z494 1330 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 KRT85P78386 507 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 MAP3K11Q16584 847 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 COPS6Q7L5N1 327 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 NUP62CLQ9H1M0 184 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 MYH7P12883 1935 aa9.8□□□□□ -0.84
VAPB-205ENST00000476395 ANKRD65E5RJM6 399 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 PNMA6AP0CW24 399 aaPredicted RBP9.79□□□□□ -0.84
VAPB-205ENST00000476395 PTPN14Q15678 1187 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 CC2D2BQ6DHV5 1058 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 EP400NLQ6ZTU2 488 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 Q6ZUG5 572 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 NSUN7Q8NE18 718 aaKnown RBP9.79□□□□□ -0.84
VAPB-205ENST00000476395 BRF1Q92994 677 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 FSD1Q9BTV5 496 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 LRRC2Q9BYS8 371 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 MYL6BP14649 208 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 PHKG2P15735 406 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 ZKSCAN1P17029 563 aaPredicted RBP9.79□□□□□ -0.84
VAPB-205ENST00000476395 LRRC8AQ8IWT6 810 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 HAUS7Q99871 368 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 SKILP12757 684 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 PSME1Q06323 249 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 NYAP1Q6ZVC0 841 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 PROSER2Q86WR7 435 aaPredicted RBP9.79□□□□□ -0.84
VAPB-205ENST00000476395 DHX40Q8IX18 779 aaKnown RBP9.79□□□□□ -0.84
VAPB-205ENST00000476395 MYD88Q99836 296 aa9.79□□□□□ -0.84
VAPB-205ENST00000476395 C1orf167Q5SNV9 1468 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 CYP27B1O15528 508 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 FDPSP14324 419 aaKnown RBP9.78□□□□□ -0.84
VAPB-205ENST00000476395 CCDC34Q96HJ3 373 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 HMG20BQ9P0W2 317 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 NHSL1Q5SYE7 1610 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 NBPF26B4DH59 902 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 TPM3P06753 285 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 G3BP1Q13283 466 aaKnown RBP eCLIP9.78□□□□□ -0.848e-6■■□□□ 11.5
VAPB-205ENST00000476395 NBPF14Q5TI25 921 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 NBPF10Q6P3W6 841 aaKnown RBP9.78□□□□□ -0.84
VAPB-205ENST00000476395 NBPF15Q8N660 670 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 SH3TC1Q8TE82 1336 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 HIP1O00291 1037 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 DHX16O60231 1041 aaKnown RBP9.78□□□□□ -0.84
VAPB-205ENST00000476395 PSMA5P28066 241 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 NOP2P46087 812 aaKnown RBP9.78□□□□□ -0.84
VAPB-205ENST00000476395 ZNF165P49910 485 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 ARHGAP29Q52LW3 1261 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 SPATA32Q96LK8 384 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 TNMDQ9H2S6 317 aa9.78□□□□□ -0.84
VAPB-205ENST00000476395 PFKFB2O60825 505 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 SASH3O75995 380 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 C1orf141Q5JVX7 400 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 NBPF11Q86T75 865 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 GPATCH3Q96I76 525 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 NEK1Q96PY6 1258 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 MYO1CO00159 1063 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 SLU7O95391 586 aaKnown RBP9.77□□□□□ -0.85
VAPB-205ENST00000476395 H2AFXP16104 143 aaPredicted RBP9.77□□□□□ -0.85
VAPB-205ENST00000476395 CCZ1BP86790 482 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 CCZ1P86791 482 aaPredicted RBP9.77□□□□□ -0.85
VAPB-205ENST00000476395 ERO1AQ96HE7 468 aa9.77□□□□□ -0.85
VAPB-205ENST00000476395 XIRP1Q702N8 1843 aaKnown RBP9.77□□□□□ -0.85
VAPB-205ENST00000476395 CCDC69A6NI79 296 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 FANCGO15287 622 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 PTPN21Q16825 1174 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 DDX46Q7L014 1031 aaKnown RBP9.76□□□□□ -0.85
VAPB-205ENST00000476395 SCAND2PQ9GZW5 306 aaPredicted RBP9.76□□□□□ -0.85
VAPB-205ENST00000476395 RCOR1Q9UKL0 485 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 ANKRD1Q15327 319 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 CCDC191Q8NCU4 936 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 GPHNQ9NQX3 736 aaPredicted RBP9.76□□□□□ -0.85
VAPB-205ENST00000476395 FOXR1Q6PIV2 292 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 SARM1Q6SZW1 724 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 USP28Q96RU2 1077 aa9.76□□□□□ -0.85
VAPB-205ENST00000476395 DDX19AQ9NUU7 478 aaKnown RBP9.76□□□□□ -0.85
VAPB-205ENST00000476395 PPFIA3O75145 1194 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 BMS1Q14692 1282 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 SART3Q15020 963 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 UBE3BQ7Z3V4 1068 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 RIC3Q7Z5B4 369 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 HSD3B7Q9H2F3 369 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 NCOA5Q9HCD5 579 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 ATP5J2-PTCD1G3V325 749 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 PTCD1O75127 700 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 CDC25BP30305 580 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 CEBPZQ03701 1054 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 ANKRD13DQ6ZTN6 518 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 CCAR2Q8N163 923 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 DDX17Q92841 729 aaKnown RBP9.75□□□□□ -0.85
VAPB-205ENST00000476395 RASSF4Q9H2L5 321 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 H7C1W4 665 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 M0R2C6 588 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 PDCP20941 246 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 EVCP57679 992 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 APOBRQ0VD83 1088 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 MCMDC2Q4G0Z9 681 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 KBTBD3Q8NAB2 608 aa9.75□□□□□ -0.85
VAPB-205ENST00000476395 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.74□□□□□ -0.85
VAPB-205ENST00000476395 MAST3O60307 1309 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 ZSCAN26Q16670 478 aa9.74□□□□□ -0.85
VAPB-205ENST00000476395 ZMYM1Q5SVZ6 1142 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms