RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 KCNK4Q9NYG8 393 aa8.61□□□□□ -1.03
PTCD3-211ENST00000476215 FAM117BQ6P1L5 589 aa8.6□□□□□ -1.03
PTCD3-211ENST00000476215 TXNDC11Q6PKC3 985 aa8.6□□□□□ -1.03
PTCD3-211ENST00000476215 BSNDQ8WZ55 320 aa8.6□□□□□ -1.03
PTCD3-211ENST00000476215 TP53INP1Q96A56 240 aa8.6□□□□□ -1.03
PTCD3-211ENST00000476215 ALKBH8Q96BT7 664 aaKnown RBP8.6□□□□□ -1.03
PTCD3-211ENST00000476215 SEC31BQ9NQW1 1179 aa8.6□□□□□ -1.03
PTCD3-211ENST00000476215 ADAM11O75078 769 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 TRPA1O75762 1119 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 WISP1O95388 367 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 NEFLP07196 543 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 MAPK8P45983 427 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 CABP4P57796 275 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 ORC1Q13415 861 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 DSC3Q14574 896 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 VN1R5Q7Z5H4 357 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 NPAS4Q8IUM7 802 aa8.59□□□□□ -1.03
PTCD3-211ENST00000476215 FOXD4L4Q8WXT5 416 aaPredicted RBP8.59□□□□□ -1.03
PTCD3-211ENST00000476215 SOX17Q9H6I2 414 aaPredicted RBP8.59□□□□□ -1.03
PTCD3-211ENST00000476215 KIAA1211Q6ZU35 1233 aa8.58□□□□□ -1.04
PTCD3-211ENST00000476215 RGS22Q8NE09 1264 aa8.58□□□□□ -1.04
PTCD3-211ENST00000476215 KLHDC7BQ96G42 594 aa8.58□□□□□ -1.04
PTCD3-211ENST00000476215 LATS2Q9NRM7 1088 aa8.58□□□□□ -1.04
PTCD3-211ENST00000476215 FAM177BA6PVY3 158 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 ALX3O95076 343 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 P4HBP07237 508 aaKnown RBP8.57□□□□□ -1.04
PTCD3-211ENST00000476215 FMR1Q06787 632 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTCD3-211ENST00000476215 PRSS36Q5K4E3 855 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 KIAA0319Q5VV43 1072 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 CCNJLQ8IV13 435 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 CARD10Q9BWT7 1032 aa8.57□□□□□ -1.04
PTCD3-211ENST00000476215 EIF1AYO14602 144 aaKnown RBP8.56□□□□□ -1.04
PTCD3-211ENST00000476215 CSRNP1Q96S65 589 aa8.56□□□□□ -1.04
PTCD3-211ENST00000476215 TCF12Q99081 682 aa8.56□□□□□ -1.04
PTCD3-211ENST00000476215 DNAJC25Q9H1X3 360 aa8.56□□□□□ -1.04
PTCD3-211ENST00000476215 PNMA6FA0A0J9YX94 578 aa8.55□□□□□ -1.04
PTCD3-211ENST00000476215 A0A1W2PP55 124 aa8.55□□□□□ -1.04
PTCD3-211ENST00000476215 CPNE3O75131 537 aaKnown RBP8.55□□□□□ -1.04
PTCD3-211ENST00000476215 UVSSAQ2YD98 709 aa8.55□□□□□ -1.04
PTCD3-211ENST00000476215 EAPPQ56P03 285 aaPredicted RBP8.55□□□□□ -1.04
PTCD3-211ENST00000476215 PRR23CQ6ZRP0 262 aa8.55□□□□□ -1.04
PTCD3-211ENST00000476215 SOX1O00570 391 aaPredicted RBP8.54□□□□□ -1.04
PTCD3-211ENST00000476215 C19orf57Q0VDD7 668 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 COL19A1Q14993 1142 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 USPL1Q5W0Q7 1092 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 ACAD11Q709F0 780 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 SLC51AQ86UW1 340 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 AGGF1Q8N302 714 aaeCLIP8.54□□□□□ -1.04
PTCD3-211ENST00000476215 FAM46AQ96IP4 442 aaKnown RBP8.54□□□□□ -1.04
PTCD3-211ENST00000476215 UBL7Q96S82 380 aaPredicted RBP8.54□□□□□ -1.04
PTCD3-211ENST00000476215 BCL2L13Q9BXK5 485 aa8.54□□□□□ -1.04
PTCD3-211ENST00000476215 MEGF11A6BM72 1044 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 EIF4EBP3O60516 100 aaPredicted RBP8.53□□□□□ -1.04
PTCD3-211ENST00000476215 POLR3DP05423 398 aaPredicted RBP8.53□□□□□ -1.04
PTCD3-211ENST00000476215 ESRRAP11474 423 aaPredicted RBP8.53□□□□□ -1.04
PTCD3-211ENST00000476215 CDC25BP30305 580 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 ATP2B2Q01814 1243 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 IKBKEQ14164 716 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 ENOX2Q16206 610 aaKnown RBP8.53□□□□□ -1.04
PTCD3-211ENST00000476215 DUOXA2Q1HG44 320 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 UBASH3BQ8TF42 649 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 CEP41Q9BYV8 373 aa8.53□□□□□ -1.04
PTCD3-211ENST00000476215 DDX3YO15523 660 aaKnown RBP8.52□□□□□ -1.05
PTCD3-211ENST00000476215 LDHBP07195 334 aaKnown RBP8.52□□□□□ -1.05
PTCD3-211ENST00000476215 HGSNATQ68CP4 663 aa8.52□□□□□ -1.05
PTCD3-211ENST00000476215 NRSN2Q9GZP1 204 aa8.52□□□□□ -1.05
PTCD3-211ENST00000476215 WWC3Q9ULE0 1092 aa8.52□□□□□ -1.05
PTCD3-211ENST00000476215 GLB1P16278 677 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 ARL4DP49703 201 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 ZMYM1Q5SVZ6 1142 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 PRPF40BQ6NWY9 871 aaKnown RBP8.51□□□□□ -1.05
PTCD3-211ENST00000476215 FBXO33Q7Z6M2 555 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 ARMC10Q8N2F6 343 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 Q8N3U1 123 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 GIPC2Q8TF65 315 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 SETDB2Q96T68 719 aa8.51□□□□□ -1.05
PTCD3-211ENST00000476215 A0A096LPE4 126 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 A0A1W2PPZ6 126 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 ITPKAP23677 461 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 GRIA4P48058 902 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 PTPN12Q05209 780 aaKnown RBP8.5□□□□□ -1.05
PTCD3-211ENST00000476215 ANKRD34AQ69YU3 496 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 CCDC74AQ96AQ1 378 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 RNF208Q9H0X6 261 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 LIN7BQ9HAP6 207 aa8.5□□□□□ -1.05
PTCD3-211ENST00000476215 METTL12A8MUP2 240 aa8.49□□□□□ -1.05
PTCD3-211ENST00000476215 TAGLNQ01995 201 aaKnown RBP8.49□□□□□ -1.05
PTCD3-211ENST00000476215 ALG1LQ6GMV1 187 aa8.49□□□□□ -1.05
PTCD3-211ENST00000476215 ASAP3Q8TDY4 903 aa8.49□□□□□ -1.05
PTCD3-211ENST00000476215 TMPRSS13Q9BYE2 586 aa8.49□□□□□ -1.05
PTCD3-211ENST00000476215 CLEC4MQ9H2X3 399 aaPredicted RBP8.49□□□□□ -1.05
PTCD3-211ENST00000476215 SUGCTQ9HAC7 445 aa8.49□□□□□ -1.05
PTCD3-211ENST00000476215 PRPF40AO75400 957 aaKnown RBP8.48□□□□□ -1.05
PTCD3-211ENST00000476215 NLRP12P59046 1061 aa8.48□□□□□ -1.05
PTCD3-211ENST00000476215 FGD1P98174 961 aa8.48□□□□□ -1.05
PTCD3-211ENST00000476215 ZNF326Q5BKZ1 582 aaKnown RBP8.48□□□□□ -1.05
PTCD3-211ENST00000476215 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.48□□□□□ -1.05
PTCD3-211ENST00000476215 SLC7A3Q8WY07 619 aa8.48□□□□□ -1.05
PTCD3-211ENST00000476215 NPHS2Q9NP85 383 aa8.48□□□□□ -1.05
PTCD3-211ENST00000476215 RAXQ9Y2V3 346 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms