RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ZNF804AQ7Z570 1209 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 FAM84BQ96KN1 310 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-204ENST00000475218 PAPPA2Q9BXP8 1791 aa17.75■□□□□ 0.43
UPF3A-204ENST00000475218 MOB2Q70IA6 237 aa17.75■□□□□ 0.43
UPF3A-204ENST00000475218 C2orf69Q8N8R5 385 aa17.75■□□□□ 0.43
UPF3A-204ENST00000475218 TDRD7Q8NHU6 1098 aaKnown RBP17.75■□□□□ 0.43
UPF3A-204ENST00000475218 RGMBQ6NW40 437 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 ARAP2Q8WZ64 1704 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 FAM205AQ6ZU69 1335 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 MROH5Q6ZUA9 1318 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 MMP14P50281 582 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 FKBP1AP62942 108 aaKnown RBP17.74■□□□□ 0.43
UPF3A-204ENST00000475218 TSKSQ9UJT2 592 aa17.74■□□□□ 0.43
UPF3A-204ENST00000475218 ECM29Q5VYK3 1845 aa17.73■□□□□ 0.43
UPF3A-204ENST00000475218 MTMR14Q8NCE2 650 aa17.73■□□□□ 0.43
UPF3A-204ENST00000475218 HIBADHP31937 336 aaKnown RBP17.72■□□□□ 0.43
UPF3A-204ENST00000475218 PTPN12Q05209 780 aaKnown RBP17.72■□□□□ 0.43
UPF3A-204ENST00000475218 NOGQ13253 232 aa17.72■□□□□ 0.43
UPF3A-204ENST00000475218 FBXO33Q7Z6M2 555 aa17.72■□□□□ 0.43
UPF3A-204ENST00000475218 F8W031 263 aaPredicted RBP17.71■□□□□ 0.43
UPF3A-204ENST00000475218 PDE8BO95263 885 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 SLC10A3P09131 477 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 GRIK5Q16478 980 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 HDAC9Q9UKV0 1011 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 TNNQ9UQP3 1299 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 FGFR2P21802 821 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 ZNF157P51786 506 aaPredicted RBP17.71■□□□□ 0.43
UPF3A-204ENST00000475218 METTL24Q5JXM2 366 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 ATG9AQ7Z3C6 839 aa17.71■□□□□ 0.43
UPF3A-204ENST00000475218 SSC5DA1L4H1 1573 aa17.7■□□□□ 0.42
UPF3A-204ENST00000475218 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
UPF3A-204ENST00000475218 RASAL3Q86YV0 1011 aa17.7■□□□□ 0.42
UPF3A-204ENST00000475218 PRMT6Q96LA8 375 aaPredicted RBP17.7■□□□□ 0.42
UPF3A-204ENST00000475218 API5Q9BZZ5 524 aaKnown RBP17.7■□□□□ 0.42
UPF3A-204ENST00000475218 SPDYE2BA6NHP3 402 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 UBE2Q2LH0YL09 131 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 SPDYE6P0CI01 402 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 FKBP1BP68106 108 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 KIF23Q02241 960 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-204ENST00000475218 DLGAP5Q15398 846 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 CFAP100Q494V2 611 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 CCDC102AQ96A19 550 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 MEIS3Q99687 375 aa17.69■□□□□ 0.42
UPF3A-204ENST00000475218 IQSEC3Q9UPP2 1182 aaPredicted RBP17.69■□□□□ 0.42
UPF3A-204ENST00000475218 MFSD14BQ5SR56 506 aa17.68■□□□□ 0.42
UPF3A-204ENST00000475218 EYA2O00167 538 aa17.68■□□□□ 0.42
UPF3A-204ENST00000475218 BCAR3O75815 825 aa17.68■□□□□ 0.42
UPF3A-204ENST00000475218 UBTFL1P0CB47 393 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-204ENST00000475218 INTS3Q68E01 1043 aaKnown RBP17.68■□□□□ 0.42
UPF3A-204ENST00000475218 APOBEC3FQ8IUX4 373 aaKnown RBP17.68■□□□□ 0.42
UPF3A-204ENST00000475218 ARHGAP45Q92619 1136 aa17.68■□□□□ 0.42
UPF3A-204ENST00000475218 LRRFIP2Q9Y608 721 aaKnown RBP17.68■□□□□ 0.42
UPF3A-204ENST00000475218 CLRN2A0PK11 232 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 CAPN15O75808 1086 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 BCAMP50895 628 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 BEGAINQ9BUH8 593 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 FZD1Q9UP38 647 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 KIF16BQ96L93 1317 aa17.67■□□□□ 0.42
UPF3A-204ENST00000475218 COL1A1P02452 1464 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-204ENST00000475218 CSRNP1Q96S65 589 aa17.66■□□□□ 0.42
UPF3A-204ENST00000475218 DEFB129Q9H1M3 183 aa17.66■□□□□ 0.42
UPF3A-204ENST00000475218 CASP8AP2Q9UKL3 1982 aa17.66■□□□□ 0.42
UPF3A-204ENST00000475218 TRIM27P14373 513 aa17.66■□□□□ 0.42
UPF3A-204ENST00000475218 CA12O43570 354 aa17.65■□□□□ 0.42
UPF3A-204ENST00000475218 PUM3Q15397 648 aaKnown RBP17.65■□□□□ 0.42
UPF3A-204ENST00000475218 TTF2Q9UNY4 1162 aaKnown RBP17.65■□□□□ 0.42
UPF3A-204ENST00000475218 PA2G4Q9UQ80 394 aaKnown RBP17.65■□□□□ 0.42
UPF3A-204ENST00000475218 LDLRAD1Q5T700 205 aa17.64■□□□□ 0.41
UPF3A-204ENST00000475218 SIL1Q9H173 461 aa17.64■□□□□ 0.41
UPF3A-204ENST00000475218 CIAO1O76071 339 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 HNRNPUQ00839 825 aaKnown RBP eCLIP17.63■□□□□ 0.41
UPF3A-204ENST00000475218 CHAF1AQ13111 956 aaPredicted RBP17.63■□□□□ 0.41
UPF3A-204ENST00000475218 PRKG1Q13976 671 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 SERPINA10Q9UK55 444 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 AKAP11Q9UKA4 1901 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 CAVIN4Q5BKX8 364 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 CDAN1Q8IWY9 1227 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 RNF186Q9NXI6 227 aa17.63■□□□□ 0.41
UPF3A-204ENST00000475218 MYH13Q9UKX3 1938 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 CRKP46108 304 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 SPDYE2Q495Y8 402 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 ATF7IPQ6VMQ6 1270 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 VPS37DQ86XT2 251 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 DZIP1LQ8IYY4 767 aaKnown RBP17.62■□□□□ 0.41
UPF3A-204ENST00000475218 TDRD3Q9H7E2 651 aaKnown RBP17.62■□□□□ 0.41
UPF3A-204ENST00000475218 COPRSQ9NQ92 184 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 ZNF70Q9UC06 446 aaPredicted RBP17.62■□□□□ 0.41
UPF3A-204ENST00000475218 FBXO3Q9UK99 471 aa17.62■□□□□ 0.41
UPF3A-204ENST00000475218 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.62■□□□□ 0.41
UPF3A-204ENST00000475218 TTLL12Q14166 644 aaPredicted RBP17.61■□□□□ 0.41
UPF3A-204ENST00000475218 NBPF12Q5TAG4 269 aaPredicted RBP17.61■□□□□ 0.41
UPF3A-204ENST00000475218 LPIN2Q92539 896 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 VEZTQ9HBM0 779 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 SAGE1Q9NXZ1 904 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 PPP2R3BQ9Y5P8 575 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 IFIT1P09914 478 aaKnown RBP17.61■□□□□ 0.41
UPF3A-204ENST00000475218 NF2P35240 595 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 RBM5P52756 815 aaKnown RBP eCLIP17.61■□□□□ 0.41
UPF3A-204ENST00000475218 MTX1Q13505 466 aa17.61■□□□□ 0.41
UPF3A-204ENST00000475218 RASA3Q14644 834 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms