RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MFSD14AQ96MC6 490 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 TMPRSS13Q9BYE2 586 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 RNF114Q9Y508 228 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 WNT11O96014 354 aa7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 ATP2B4P23634 1241 aa7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 MAP4P27816 1152 aaKnown RBP7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 TMEM102Q8N9M5 508 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 SLC7A3Q8WY07 619 aa7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 NXPE3Q969Y0 559 aa7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 KCNF1Q9H3M0 494 aa7.76□□□□□ -1.17
CCDC88A-212ENST00000474059 CES1P23141 567 aa7.75□□□□□ -1.17
CCDC88A-212ENST00000474059 COL19A1Q14993 1142 aa7.75□□□□□ -1.17
CCDC88A-212ENST00000474059 ABI1Q8IZP0 508 aa7.75□□□□□ -1.17
CCDC88A-212ENST00000474059 HELQQ8TDG4 1101 aa7.75□□□□□ -1.17
CCDC88A-212ENST00000474059 ZKSCAN3Q9BRR0 538 aa7.75□□□□□ -1.17
CCDC88A-212ENST00000474059 LOC100289279A0A1B0GTE1 492 aa7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 SART1O43290 800 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 C19orf57Q0VDD7 668 aa7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 LCE1DQ5T752 114 aa7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 SMG8Q8ND04 991 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 NRSN2Q9GZP1 204 aa7.74□□□□□ -1.17
CCDC88A-212ENST00000474059 EREGO14944 169 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 CABP4P57796 275 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 DNM1Q05193 864 aaKnown RBP7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 FDX2Q6P4F2 183 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 GATA6Q92908 595 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 OSMRQ99650 979 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 SUGCTQ9HAC7 445 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 PIM2Q9P1W9 311 aa7.73□□□□□ -1.17
CCDC88A-212ENST00000474059 YBX3P16989 372 aaKnown RBP eCLIP7.72□□□□□ -1.171e-6■■□□□ 11.8
CCDC88A-212ENST00000474059 MPSTP25325 297 aa7.72□□□□□ -1.17
CCDC88A-212ENST00000474059 ADMP35318 185 aa7.72□□□□□ -1.17
CCDC88A-212ENST00000474059 PEAR1Q5VY43 1037 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-212ENST00000474059 CDPF1Q6NVV7 123 aa7.72□□□□□ -1.17
CCDC88A-212ENST00000474059 LATS2Q9NRM7 1088 aa7.72□□□□□ -1.17
CCDC88A-212ENST00000474059 PRNPP04156 253 aa7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 MZF1P28698 734 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 EIF1AXP47813 144 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 CBLL1Q75N03 491 aa7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 BSNDQ8WZ55 320 aa7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 PBXIP1Q96AQ6 731 aa7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 BHLHE41Q9C0J9 482 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-212ENST00000474059 DRD2P14416 443 aa7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 FOSL1P15407 271 aa7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 MTMR3Q13615 1198 aa7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 C2CD4AQ8NCU7 369 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 CCDC39Q9UFE4 941 aa7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 FOXD3Q9UJU5 478 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-212ENST00000474059 METTL12A8MUP2 240 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 GAS2O43903 313 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 TNFRSF21O75509 655 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 RPLP1P05386 114 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 CTSBP07858 339 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 ESRRAP11474 423 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 IKBKEQ14164 716 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 NOM1Q5C9Z4 860 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 FBXL6Q8N531 539 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 SOX17Q9H6I2 414 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 POLIQ9UNA4 740 aa7.69□□□□□ -1.18
CCDC88A-212ENST00000474059 C8orf34Q49A92 452 aa7.68□□□□□ -1.18
CCDC88A-212ENST00000474059 C12orf50Q8NA57 414 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-212ENST00000474059 FBLIM1Q8WUP2 373 aa7.68□□□□□ -1.18
CCDC88A-212ENST00000474059 EZH1Q92800 747 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-212ENST00000474059 USP26Q9BXU7 913 aa7.68□□□□□ -1.18
CCDC88A-212ENST00000474059 FAM177BA6PVY3 158 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 NPR3P17342 541 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 NUTM2GQ5VZR2 741 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 WFDC3Q8IUB2 231 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 GTF3C2Q8WUA4 911 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 PRKAG2Q9UGJ0 569 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 LEMD3Q9Y2U8 911 aa7.67□□□□□ -1.18
CCDC88A-212ENST00000474059 FAM95CA0A1B0GW59 222 aa7.66□□□□□ -1.18
CCDC88A-212ENST00000474059 TMEM88BA6NKF7 163 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 FAM170BA6NMN3 283 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 FZD6O60353 706 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 ITGB5P18084 799 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 ARL4DP49703 201 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 OGFOD2Q6N063 350 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 ZAR1Q86SH2 424 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 PMEPA1Q969W9 287 aa7.65□□□□□ -1.18
CCDC88A-212ENST00000474059 PHACTR2O75167 634 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 SSFA2P28290 1259 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 RXRBP28702 533 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 FZD5Q13467 585 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 CPSF6Q16630 551 aaKnown RBP eCLIP7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 SNX29Q8TEQ0 813 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 OSBPL1AQ9BXW6 950 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 CYP4F12Q9HCS2 524 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 ATG3Q9NT62 314 aa7.64□□□□□ -1.19
CCDC88A-212ENST00000474059 ADH5P11766 374 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 EDN3P14138 238 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 JAG1P78504 1218 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 SOX4Q06945 474 aaPredicted RBP7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 NFKBIBQ15653 356 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 ZNF423Q2M1K9 1284 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 EXOSC6Q5RKV6 272 aaKnown RBP7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 VSIG10LQ86VR7 867 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 ASAP3Q8TDY4 903 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 ACTL7BQ9Y614 415 aa7.63□□□□□ -1.19
CCDC88A-212ENST00000474059 ECEL1O95672 775 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms