RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 PDS5AQ29RF7 1337 aaKnown RBP23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 SGSM2O43147 1006 aa23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 SLFNL1Q499Z3 407 aa23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 CC2D2BQ6DHV5 1058 aa23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 PIM2Q9P1W9 311 aa23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 RBM19Q9Y4C8 960 aaKnown RBP23.19■■□□□ 1.3
SMARCD3-209ENST00000472988 TDRD7Q8NHU6 1098 aaKnown RBP23.18■■□□□ 1.3
SMARCD3-209ENST00000472988 WWC3Q9ULE0 1092 aa23.18■■□□□ 1.3
SMARCD3-209ENST00000472988 TICAM2Q86XR7 235 aa23.17■■□□□ 1.3
SMARCD3-209ENST00000472988 RUFY2Q8WXA3 655 aa23.17■■□□□ 1.3
SMARCD3-209ENST00000472988 RTFDC1Q9BY42 306 aaPredicted RBP23.17■■□□□ 1.3
SMARCD3-209ENST00000472988 UPF2Q9HAU5 1272 aaKnown RBP23.17■■□□□ 1.3
SMARCD3-209ENST00000472988 CD209Q9NNX6 404 aa23.17■■□□□ 1.3
SMARCD3-209ENST00000472988 SCN9AQ15858 1988 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 RIMBP2O15034 1052 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 FRAT2O75474 233 aaPredicted RBP23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 RAD50Q92878 1312 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 RNF113AO15541 343 aaKnown RBP23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 IDH1O75874 414 aaKnown RBP23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 REC8O95072 547 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 IL1R1P14778 569 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 CCDC93Q567U6 631 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 NLGN2Q8NFZ4 835 aa23.16■■□□□ 1.3
SMARCD3-209ENST00000472988 PSME4Q14997 1843 aa23.15■■□□□ 1.3
SMARCD3-209ENST00000472988 EIF5BO60841 1220 aaKnown RBP23.15■■□□□ 1.3
SMARCD3-209ENST00000472988 EYA3Q99504 573 aa23.15■■□□□ 1.3
SMARCD3-209ENST00000472988 ZFYP08048 801 aaPredicted RBP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 CHAF1AQ13111 956 aaPredicted RBP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 WASHC4Q2M389 1173 aa23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 DALRD3Q5D0E6 543 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 ZMYM1Q5SVZ6 1142 aa23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 TBC1D32Q96NH3 1257 aa23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 SEC62Q99442 399 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 ZC3H12CQ9C0D7 883 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 JAG2Q9Y219 1238 aa23.14■■□□□ 1.29
SMARCD3-209ENST00000472988 ADD2P35612 726 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 LRRFIP1Q32MZ4 808 aaKnown RBP23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 ZNF589Q86UQ0 364 aaPredicted RBP23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 ANO2Q9NQ90 1003 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 GRIPAP1Q4V328 841 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 USP26Q9BXU7 913 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 C22orf23Q9BZE7 217 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 COA1Q9GZY4 146 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 ABCF2Q9UG63 623 aa23.13■■□□□ 1.29
SMARCD3-209ENST00000472988 PDE6AP16499 860 aa23.12■■□□□ 1.29
SMARCD3-209ENST00000472988 SLC9C2Q5TAH2 1124 aa23.12■■□□□ 1.29
SMARCD3-209ENST00000472988 MAST3O60307 1309 aa23.12■■□□□ 1.29
SMARCD3-209ENST00000472988 MAP3K12Q12852 859 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 MCMDC2Q4G0Z9 681 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 ZSCAN25Q6NSZ9 544 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 CCDC129Q6ZRS4 1044 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 RTKN2Q8IZC4 609 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 APPBP2Q92624 585 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 HELLSQ9NRZ9 838 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 LRP2BPQ9P2M1 347 aa23.11■■□□□ 1.29
SMARCD3-209ENST00000472988 TCRBV5S4A2TA0A5A2 114 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 DOK7Q18PE1 504 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 SOGA3Q5TF21 947 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 SUPT20HQ8NEM7 779 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 OSBP2Q969R2 916 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 LSG1Q9H089 658 aaKnown RBP23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 SALL1Q9NSC2 1324 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 MYH2Q9UKX2 1941 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 COL4A5P29400 1685 aa23.1■■□□□ 1.29
SMARCD3-209ENST00000472988 ZNF532Q9HCE3 1301 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 M0R2C6 588 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 UBE3CQ15386 1083 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 MAGEB6Q8N7X4 407 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 PSMD1Q99460 953 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 GOLGB1Q14789 3259 aaKnown RBP23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 CCDC171Q6TFL3 1326 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 RBM25P49756 843 aaKnown RBP23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 AOC3Q16853 763 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 WDR66Q8TBY9 1149 aa23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 FHDC1Q9C0D6 1143 aaPredicted RBP23.09■■□□□ 1.29
SMARCD3-209ENST00000472988 PRDX5P30044 214 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 PTH1RQ03431 593 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 KIAA2012Q0VF49 1180 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 PUS7LQ9H0K6 701 aaKnown RBP23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 DBNDD1Q9H9R9 158 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 RAI14Q9P0K7 980 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 BCS1LQ9Y276 419 aa23.08■■□□□ 1.29
SMARCD3-209ENST00000472988 FAM205AQ6ZU69 1335 aa23.07■■□□□ 1.28
SMARCD3-209ENST00000472988 KIAA1211Q6ZU35 1233 aa23.07■■□□□ 1.28
SMARCD3-209ENST00000472988 ZNF384Q8TF68 577 aa23.07■■□□□ 1.28
SMARCD3-209ENST00000472988 ERICH6Q7L0X2 663 aa23.06■■□□□ 1.28
SMARCD3-209ENST00000472988 PPIP5K2O43314 1243 aa23.06■■□□□ 1.28
SMARCD3-209ENST00000472988 GRIK5Q16478 980 aa23.06■■□□□ 1.28
SMARCD3-209ENST00000472988 ZGPATQ8N5A5 531 aaKnown RBP23.06■■□□□ 1.28
SMARCD3-209ENST00000472988 G3V3G9 751 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 EPB41L2O43491 1005 aaKnown RBP23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 ECE2O60344 883 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 GTF2IP78347 998 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 DCAF8Q5TAQ9 597 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 ADGRA1Q86SQ6 560 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 ADAMTSL1Q8N6G6 1762 aa23.05■■□□□ 1.28
SMARCD3-209ENST00000472988 MECOMQ03112 1051 aa23.04■■□□□ 1.28
SMARCD3-209ENST00000472988 NSUN4Q96CB9 384 aaKnown RBP23.04■■□□□ 1.28
SMARCD3-209ENST00000472988 ZNF277Q9NRM2 450 aaPredicted RBP23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms