RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ABL1P00519 1130 aa14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 RRP36Q96EU6 259 aaKnown RBP14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 PSMA7O14818 248 aa14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 LPXNO60711 386 aa14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 NBPF8Q3BBV2 869 aa14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 NBPF14Q5TI25 921 aa14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DDX19AQ9NUU7 478 aaKnown RBP14.93□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DDX39AO00148 427 aaKnown RBP14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 GNL1P36915 607 aaPredicted RBP14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 CCDC184Q52MB2 194 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 RNASE9P60153 205 aaKnown RBP14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 PYM1Q9BRP8 204 aaKnown RBP14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 KIF21BO75037 1637 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 FNBP1Q96RU3 617 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DDX12PQ92771 950 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 GPCPD1Q9NPB8 672 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 CCDC77Q9BR77 488 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 GTF3C6Q969F1 213 aa14.92□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DDB1Q16531 1140 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 COPS6Q7L5N1 327 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 ZCRB1Q8TBF4 217 aaKnown RBP14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 INF2Q27J81 1249 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 FBXO31Q5XUX0 539 aaPredicted RBP14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 XAGE3Q8WTP9 111 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 UBXN1Q04323 297 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 ANO6Q4KMQ2 910 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 Q6ZUG5 572 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 ANKS4BQ8N8V4 417 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 LEO1Q8WVC0 666 aaPredicted RBP14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 MYCLP12524 364 aaPredicted RBP14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DNAI1Q9UI46 699 aa14.91□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 DIXDC1Q155Q3 683 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 TACC3Q9Y6A5 838 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 SLC8A3P57103 927 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 C4orf50Q6ZRC1 276 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 TBC1D9Q6ZT07 1266 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 TNPO1Q92973 898 aaKnown RBP14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 NEK11Q8NG66 645 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 NSRP1Q9H0G5 558 aaKnown RBP14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 GUCA1BQ9UMX6 200 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 GIPC1O14908 333 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 UQCRFS1P1P0C7P4 283 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 SARNPP82979 210 aaKnown RBP14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 SLFN5Q08AF3 891 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 SF3A3Q12874 501 aaKnown RBP eCLIP14.9□□□□□ -0.023e-6■□□□□ 9.9
NPHP3-ACAD11-201ENST00000471702 GBP7Q8N8V2 638 aaPredicted RBP14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 IVNS1ABPQ9Y6Y0 642 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 MSL1Q68DK7 614 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 CEP57Q86XR8 500 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 MSANTD4Q8NCY6 345 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.9□□□□□ -0.025e-7■■■■□ 19.7
NPHP3-ACAD11-201ENST00000471702 EHBP1Q8NDI1 1231 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 IRAK4Q9NWZ3 460 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 TOM1O60784 492 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 SEC62Q99442 399 aaKnown RBP14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 RSPH14Q9UHP6 348 aa14.9□□□□□ -0.02
NPHP3-ACAD11-201ENST00000471702 KRT79Q5XKE5 535 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LRPPRCP42704 1394 aaKnown RBP14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 KARSQ15046 597 aaKnown RBP14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 KIAA1524Q8TCG1 905 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CTAGE9A4FU28 777 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 STX10O60499 249 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 EPRSP07814 1512 aaKnown RBP14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PTPDC1A2A3K4 754 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RARSP54136 660 aaKnown RBP14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 DZIP3Q86Y13 1208 aaKnown RBP14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 GPIHBP1Q8IV16 184 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 FRMD4BQ9Y2L6 1034 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 NUMA1Q14980 2115 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CPXCR1Q8N123 301 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 VPS52Q8N1B4 723 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 RNF169Q8NCN4 708 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LZTFL1Q9NQ48 299 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SFMBT1Q9UHJ3 866 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 AOPEPQ8N6M6 819 aa14.89□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SPDYE16A6NNV3 312 aaPredicted RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 STK25O00506 426 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 SPDYE2Q495Y8 402 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 POTEB2H3BUK9 544 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 WDR46O15213 610 aaKnown RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 ATP2A2P16615 1042 aaKnown RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TRAF1Q13077 416 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 GOLGA1Q92805 767 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TMOD4Q9NZQ9 345 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LDHBP07195 334 aaKnown RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 UBLCP1Q8WVY7 318 aaPredicted RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CNPY2Q9Y2B0 182 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CASC4Q6P4E1 433 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 LMBR1LQ6UX01 489 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TPTE2Q6XPS3 522 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 HMGB1P1B2RPK0 211 aaPredicted RBP14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 PRPHP41219 470 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CCDC42Q96M95 316 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TACC1O75410 805 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TRIM27P14373 513 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 UBE2HP62256 183 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 FAM47CQ5HY64 1035 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 DTHD1Q6ZMT9 781 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 CALCOCO1Q9P1Z2 691 aa14.88□□□□□ -0.03
NPHP3-ACAD11-201ENST00000471702 TCP10Q12799 353 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms