RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SSH1Q8WYL5 1049 aa22.01■■□□□ 1.11
COL7A1-206ENST00000466591 BICC1Q9H694 974 aaKnown RBP22.01■■□□□ 1.11
COL7A1-206ENST00000466591 MROH5Q6ZUA9 1318 aa22.01■■□□□ 1.11
COL7A1-206ENST00000466591 CCDC85CA6NKD9 419 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 IL1R1P14778 569 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 HIBADHP31937 336 aaKnown RBP22■■□□□ 1.11
COL7A1-206ENST00000466591 SLFN5Q08AF3 891 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 UBE4AQ14139 1066 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 RASAL3Q86YV0 1011 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 VEZTQ9HBM0 779 aa22■■□□□ 1.11
COL7A1-206ENST00000466591 TRPA1O75762 1119 aa21.99■■□□□ 1.11
COL7A1-206ENST00000466591 MOB2Q70IA6 237 aa21.99■■□□□ 1.11
COL7A1-206ENST00000466591 SAGE1Q9NXZ1 904 aa21.99■■□□□ 1.11
COL7A1-206ENST00000466591 DGKZQ13574 1117 aa21.98■■□□□ 1.11
COL7A1-206ENST00000466591 ALDH1L2Q3SY69 923 aa21.98■■□□□ 1.11
COL7A1-206ENST00000466591 CFAP100Q494V2 611 aa21.98■■□□□ 1.11
COL7A1-206ENST00000466591 CAVIN4Q5BKX8 364 aa21.98■■□□□ 1.11
COL7A1-206ENST00000466591 CLRN2A0PK11 232 aa21.97■■□□□ 1.11
COL7A1-206ENST00000466591 GYG1P46976 350 aa21.97■■□□□ 1.11
COL7A1-206ENST00000466591 FKBP1AP62942 108 aaKnown RBP21.97■■□□□ 1.11
COL7A1-206ENST00000466591 MFSD14BQ5SR56 506 aa21.97■■□□□ 1.11
COL7A1-206ENST00000466591 PUS3Q9BZE2 481 aaKnown RBP21.97■■□□□ 1.11
COL7A1-206ENST00000466591 MKRN3Q13064 507 aaKnown RBP21.96■■□□□ 1.11
COL7A1-206ENST00000466591 CERS5Q8N5B7 392 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 CDCA7LQ96GN5 454 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 DEFB129Q9H1M3 183 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 RNF186Q9NXI6 227 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 ANGEL1Q9UNK9 670 aaKnown RBP21.96■■□□□ 1.11
COL7A1-206ENST00000466591 UTYO14607 1347 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 A0A1B0GUL6 1792 aa21.96■■□□□ 1.11
COL7A1-206ENST00000466591 PPP1R12BO60237 982 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-206ENST00000466591 CHAF1AQ13111 956 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-206ENST00000466591 CSRNP1Q96S65 589 aa21.95■■□□□ 1.1
COL7A1-206ENST00000466591 TTF2Q9UNY4 1162 aaKnown RBP21.95■■□□□ 1.1
COL7A1-206ENST00000466591 COL1A1P02452 1464 aaPredicted RBP21.95■■□□□ 1.1
COL7A1-206ENST00000466591 MCOLN1Q9GZU1 580 aa21.94■■□□□ 1.1
COL7A1-206ENST00000466591 PPP2R3BQ9Y5P8 575 aa21.94■■□□□ 1.1
COL7A1-206ENST00000466591 IRS2Q9Y4H2 1338 aa21.94■■□□□ 1.1
COL7A1-206ENST00000466591 SPDYE2BA6NHP3 402 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 ZNF646O15015 1829 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-206ENST00000466591 UBTFL1P0CB47 393 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-206ENST00000466591 SPDYE6P0CI01 402 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 SREBF2Q12772 1141 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 RABL6Q3YEC7 729 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-206ENST00000466591 SUPT20HL1Q3ZLR7 823 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 MTMR14Q8NCE2 650 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 KAZALD1Q96I82 304 aa21.93■■□□□ 1.1
COL7A1-206ENST00000466591 IQSEC3Q9UPP2 1182 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-206ENST00000466591 AKAP11Q9UKA4 1901 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 CCER2I3L3R5 266 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 IFIT1P09914 478 aaKnown RBP21.92■■□□□ 1.1
COL7A1-206ENST00000466591 CT47B1P0C2W7 299 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-206ENST00000466591 TNFAIP1Q13829 316 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 LRRC24Q50LG9 513 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 TDRD7Q8NHU6 1098 aaKnown RBP21.92■■□□□ 1.1
COL7A1-206ENST00000466591 HDAC5Q9UQL6 1122 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 RIPOR2Q9Y4F9 1068 aa21.92■■□□□ 1.1
COL7A1-206ENST00000466591 FAM205AQ6ZU69 1335 aa21.91■■□□□ 1.1
COL7A1-206ENST00000466591 ANKRD44Q8N8A2 993 aa21.91■■□□□ 1.1
COL7A1-206ENST00000466591 KLHDC4Q8TBB5 520 aa21.91■■□□□ 1.1
COL7A1-206ENST00000466591 FAM84BQ96KN1 310 aaPredicted RBP21.91■■□□□ 1.1
COL7A1-206ENST00000466591 API5Q9BZZ5 524 aaKnown RBP21.91■■□□□ 1.1
COL7A1-206ENST00000466591 USP44Q9H0E7 712 aa21.91■■□□□ 1.1
COL7A1-206ENST00000466591 CASP8AP2Q9UKL3 1982 aa21.9■■□□□ 1.1
COL7A1-206ENST00000466591 PDE8BO95263 885 aa21.9■■□□□ 1.1
COL7A1-206ENST00000466591 PTPN12Q05209 780 aaKnown RBP21.9■■□□□ 1.1
COL7A1-206ENST00000466591 TBC1D22AQ8WUA7 517 aa21.9■■□□□ 1.1
COL7A1-206ENST00000466591 SLC10A4Q96EP9 437 aa21.9■■□□□ 1.1
COL7A1-206ENST00000466591 ZBED3Q96IU2 234 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-206ENST00000466591 PRMT6Q96LA8 375 aaPredicted RBP21.9■■□□□ 1.1
COL7A1-206ENST00000466591 NOB1Q9ULX3 412 aaKnown RBP21.9■■□□□ 1.1
COL7A1-206ENST00000466591 PCDHAC2Q9Y5I4 1007 aa21.9■■□□□ 1.1
COL7A1-206ENST00000466591 TNNI2P48788 182 aa21.89■■□□□ 1.09
COL7A1-206ENST00000466591 PUM3Q15397 648 aaKnown RBP21.89■■□□□ 1.09
COL7A1-206ENST00000466591 SERPINA10Q9UK55 444 aa21.89■■□□□ 1.09
COL7A1-206ENST00000466591 SLC5A1P13866 664 aa21.88■■□□□ 1.09
COL7A1-206ENST00000466591 IREB2P48200 963 aaKnown RBP21.88■■□□□ 1.09
COL7A1-206ENST00000466591 TMOD2Q9NZR1 351 aa21.88■■□□□ 1.09
COL7A1-206ENST00000466591 RASA3Q14644 834 aa21.87■■□□□ 1.09
COL7A1-206ENST00000466591 FZD1Q9UP38 647 aa21.87■■□□□ 1.09
COL7A1-206ENST00000466591 EYA2O00167 538 aa21.86■■□□□ 1.09
COL7A1-206ENST00000466591 CRKP46108 304 aa21.86■■□□□ 1.09
COL7A1-206ENST00000466591 SIL1Q9H173 461 aa21.86■■□□□ 1.09
COL7A1-206ENST00000466591 TDRD3Q9H7E2 651 aaKnown RBP21.86■■□□□ 1.09
COL7A1-206ENST00000466591 ECM29Q5VYK3 1845 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 KIF16BQ96L93 1317 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 TCP10L2B9ZVM9 353 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 TBC1D8O95759 1140 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 BCAMP50895 628 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 FBXO33Q7Z6M2 555 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 DZIP1LQ8IYY4 767 aaKnown RBP21.85■■□□□ 1.09
COL7A1-206ENST00000466591 TEKT1Q969V4 418 aa21.85■■□□□ 1.09
COL7A1-206ENST00000466591 ZNF70Q9UC06 446 aaPredicted RBP21.85■■□□□ 1.09
COL7A1-206ENST00000466591 MAST3O60307 1309 aa21.84■■□□□ 1.09
COL7A1-206ENST00000466591 SPDYE2Q495Y8 402 aa21.84■■□□□ 1.09
COL7A1-206ENST00000466591 NBPF12Q5TAG4 269 aaPredicted RBP21.84■■□□□ 1.09
COL7A1-206ENST00000466591 MANSC4A6NHS7 340 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-206ENST00000466591 LDLRAD1Q5T700 205 aa21.83■■□□□ 1.09
COL7A1-206ENST00000466591 SPRYD7Q5W111 196 aa21.83■■□□□ 1.09
COL7A1-206ENST00000466591 CTU1Q7Z7A3 348 aaKnown RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms