RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 NOP58Q9Y2X3 529 aaKnown RBP14.43□□□□□ -0.1
CUX1-207ENST00000465461 FRAT2O75474 233 aaPredicted RBP14.42□□□□□ -0.1
CUX1-207ENST00000465461 RPS12P25398 132 aaKnown RBP14.42□□□□□ -0.1
CUX1-207ENST00000465461 PHKA1P46020 1223 aa14.42□□□□□ -0.1
CUX1-207ENST00000465461 IRX6P78412 446 aaPredicted RBP14.42□□□□□ -0.1
CUX1-207ENST00000465461 MAP1SQ66K74 1059 aaPredicted RBP14.42□□□□□ -0.1
CUX1-207ENST00000465461 KIAA0825Q8IV33 1275 aa14.42□□□□□ -0.1
CUX1-207ENST00000465461 AGBL3Q8NEM8 1001 aa14.42□□□□□ -0.1
CUX1-207ENST00000465461 XAGE2Q96GT9 111 aa14.42□□□□□ -0.1
CUX1-207ENST00000465461 PCDHB15Q9Y5E8 787 aa14.42□□□□□ -0.1
CUX1-207ENST00000465461 USP17L8P0C7I0 530 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 GRIK5Q16478 980 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 CHADLQ6NUI6 762 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 PNMA8AQ86V59 439 aaPredicted RBP14.41□□□□□ -0.1
CUX1-207ENST00000465461 LDHDQ86WU2 507 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 SMC1BQ8NDV3 1235 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 AKAP2Q9Y2D5 859 aa14.41□□□□□ -0.1
CUX1-207ENST00000465461 ASTN2O75129 1339 aaPredicted RBP14.41□□□□□ -0.1
CUX1-207ENST00000465461 FMR1Q06787 632 aaKnown RBP eCLIP14.4□□□□□ -0.1
CUX1-207ENST00000465461 TNNI3KQ59H18 835 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 CCDC102BQ68D86 513 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 USP50Q70EL3 339 aaPredicted RBP14.4□□□□□ -0.1
CUX1-207ENST00000465461 EXOC6Q8TAG9 804 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 IL1RAPL2Q9NP60 686 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 PCDHAC2Q9Y5I4 1007 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 FPGT-TNNI3KV9GXZ4 949 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 FAM205AQ6ZU69 1335 aa14.4□□□□□ -0.1
CUX1-207ENST00000465461 COL1A1P02452 1464 aaPredicted RBP14.39□□□□□ -0.11
CUX1-207ENST00000465461 HMMRO75330 724 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 ZNF280AP59817 542 aaPredicted RBP14.39□□□□□ -0.11
CUX1-207ENST00000465461 KIF4BQ2VIQ3 1234 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 MFSD14BQ5SR56 506 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 DLK2Q6UY11 383 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 DBNDD2Q9BQY9 259 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 CCDC8Q9H0W5 538 aaPredicted RBP14.39□□□□□ -0.11
CUX1-207ENST00000465461 MYOZ2Q9NPC6 264 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 TLR7Q9NYK1 1049 aaKnown RBP14.39□□□□□ -0.11
CUX1-207ENST00000465461 SCAF8Q9UPN6 1271 aaKnown RBP14.39□□□□□ -0.11
CUX1-207ENST00000465461 ADAMTSL1Q8N6G6 1762 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 ZNF609O15014 1411 aa14.39□□□□□ -0.11
CUX1-207ENST00000465461 CNTROBQ8N137 903 aa14.38□□□□□ -0.11
CUX1-207ENST00000465461 RHPN1Q8TCX5 695 aa14.38□□□□□ -0.11
CUX1-207ENST00000465461 EAF2Q96CJ1 260 aaPredicted RBP14.38□□□□□ -0.11
CUX1-207ENST00000465461 MYO3BQ8WXR4 1341 aa14.38□□□□□ -0.11
CUX1-207ENST00000465461 ARAP2Q8WZ64 1704 aa14.38□□□□□ -0.11
CUX1-207ENST00000465461 HTRA3P83110 453 aa14.37□□□□□ -0.11
CUX1-207ENST00000465461 FSTL1Q12841 308 aa14.37□□□□□ -0.11
CUX1-207ENST00000465461 SCARF1Q14162 830 aa14.37□□□□□ -0.11
CUX1-207ENST00000465461 NBPF9Q3BBW0 867 aa14.37□□□□□ -0.11
CUX1-207ENST00000465461 GORABQ5T7V8 394 aa14.37□□□□□ -0.11
CUX1-207ENST00000465461 TRAF5O00463 557 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 SMARCA5O60264 1052 aaPredicted RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 ITGBL1O95965 494 aaPredicted RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 RASGRF1Q13972 1273 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 PI16Q6UXB8 463 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 AACSQ86V21 672 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 OGFOD1Q8N543 542 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 GLIS2Q9BZE0 524 aaPredicted RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 GPR108Q9NPR9 543 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 GNL3LQ9NVN8 582 aaKnown RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 DBNLQ9UJU6 430 aaKnown RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 TTF2Q9UNY4 1162 aaKnown RBP14.36□□□□□ -0.11
CUX1-207ENST00000465461 AOX1Q06278 1338 aa14.36□□□□□ -0.11
CUX1-207ENST00000465461 FKBP1AP62942 108 aaKnown RBP14.35□□□□□ -0.11
CUX1-207ENST00000465461 HSP90AB4PQ58FF6 505 aa14.35□□□□□ -0.11
CUX1-207ENST00000465461 ERC1Q8IUD2 1116 aa14.35□□□□□ -0.11
CUX1-207ENST00000465461 HDAC9Q9UKV0 1011 aa14.35□□□□□ -0.11
CUX1-207ENST00000465461 MYH13Q9UKX3 1938 aa14.35□□□□□ -0.11
CUX1-207ENST00000465461 WNT10BO00744 389 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 RBM5P52756 815 aaKnown RBP eCLIP14.34□□□□□ -0.11
CUX1-207ENST00000465461 CFAP100Q494V2 611 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 TTC39AQ5SRH9 613 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 ANGEL2Q5VTE6 544 aaKnown RBP14.34□□□□□ -0.11
CUX1-207ENST00000465461 USP48Q86UV5 1035 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 KIF1BPQ96EK5 621 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 SNRKQ9NRH2 765 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 GGA3Q9NZ52 723 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 HMG20BQ9P0W2 317 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 PGAP2Q9UHJ9 254 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 DENND2AQ9ULE3 1009 aa14.34□□□□□ -0.11
CUX1-207ENST00000465461 POLR2AP24928 1970 aaKnown RBP14.33□□□□□ -0.12
CUX1-207ENST00000465461 ADM5C9JUS6 153 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 RAB11FIP3O75154 756 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 HSPA6P17066 643 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 PRDX5P30044 214 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 MCAMP43121 646 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 DLGAP5Q15398 846 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 TBC1D9Q6ZT07 1266 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 WDR66Q8TBY9 1149 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 TBC1D22AQ8WUA7 517 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 PRMT6Q96LA8 375 aaPredicted RBP14.33□□□□□ -0.12
CUX1-207ENST00000465461 DCTPP1Q9H773 170 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 PASKQ96RG2 1323 aa14.33□□□□□ -0.12
CUX1-207ENST00000465461 SEMA3EO15041 775 aa14.32□□□□□ -0.12
CUX1-207ENST00000465461 ARID4AP29374 1257 aaPredicted RBP14.32□□□□□ -0.12
CUX1-207ENST00000465461 CRKP46108 304 aa14.32□□□□□ -0.12
CUX1-207ENST00000465461 CCDC158Q5M9N0 1113 aa14.32□□□□□ -0.12
CUX1-207ENST00000465461 CLASRPQ8N2M8 674 aaKnown RBP14.32□□□□□ -0.12
CUX1-207ENST00000465461 SPATA5Q8NB90 893 aa14.32□□□□□ -0.12
CUX1-207ENST00000465461 ZC3H15Q8WU90 426 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms