RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 SP8Q8IXZ3 490 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 EYA1Q99502 592 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 EYA3Q99504 573 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 HMX1Q9NP08 348 aaPredicted RBP3.68□□□□□ -1.82
USP40-211ENST00000464956 CD320Q9NPF0 282 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 CPA4Q9UI42 421 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 OGDHLQ9ULD0 1010 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 MYH14Q7Z406 1995 aaKnown RBP3.68□□□□□ -1.82
USP40-211ENST00000464956 SCN7AQ01118 1682 aa3.68□□□□□ -1.82
USP40-211ENST00000464956 ZNF646O15015 1829 aaPredicted RBP3.67□□□□□ -1.82
USP40-211ENST00000464956 RTL9Q8NET4 1388 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 NBPF26B4DH59 902 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 PROB1E7EW31 1015 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 RIMBP2O15034 1052 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 PPM1GO15355 546 aaPredicted RBP3.67□□□□□ -1.82
USP40-211ENST00000464956 CETPP11597 493 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 CTGFP29279 349 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 TCF15Q12870 199 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 SLC39A6Q13433 755 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 IRF5Q13568 498 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 PUM1Q14671 1186 aaKnown RBP eCLIP3.67□□□□□ -1.82
USP40-211ENST00000464956 NBPF9Q3BBW0 867 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 SUPT20HL1Q3ZLR7 823 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 RSBN1LQ6PCB5 846 aaPredicted RBP3.67□□□□□ -1.82
USP40-211ENST00000464956 C17orf99Q6UX52 265 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 CCDC129Q6ZRS4 1044 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 ASCL5Q7RTU5 278 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 PODNQ7Z5L7 613 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 SUGP1Q8IWZ8 645 aaKnown RBP3.67□□□□□ -1.82
USP40-211ENST00000464956 TTC5Q8N0Z6 440 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 OGFOD1Q8N543 542 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 MTMR14Q8NCE2 650 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 ANKS1AQ92625 1134 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 BADQ92934 168 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 HLA-CQ95604 372 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 CHAMP1Q96JM3 812 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 SLC12A5Q9H2X9 1139 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 ELP3Q9H9T3 547 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 SLC52A2Q9HAB3 445 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 GABRQQ9UN88 632 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 FZD1Q9UP38 647 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 KCNH4Q9UQ05 1017 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 JAG2Q9Y219 1238 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 EYSQ5T1H1 3165 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 TJP1Q07157 1748 aa3.67□□□□□ -1.82
USP40-211ENST00000464956 CHD8Q9HCK8 2581 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 ABCC12Q96J65 1359 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 PRR23AA6NEV1 266 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 BTBD19C9JJ37 291 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 C6orf229H3BNL8 230 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 TNPO2O14787 897 aaKnown RBP3.66□□□□□ -1.82
USP40-211ENST00000464956 GTPBP6O43824 516 aaPredicted RBP3.66□□□□□ -1.82
USP40-211ENST00000464956 HMGCRP04035 888 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 COL6A1P12109 1028 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 DMWDQ09019 674 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 DOK7Q18PE1 504 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 IER5LQ5T953 404 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 TMC4Q7Z404 712 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 ADSSL1Q8N142 457 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 RMDN1Q96DB5 314 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 NLRP3Q96P20 1036 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 PRDM5Q9NQX1 630 aaPredicted RBP3.66□□□□□ -1.82
USP40-211ENST00000464956 KCNQ5Q9NR82 932 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 MSRAQ9UJ68 235 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 PPP2R3BQ9Y5P8 575 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 LAMA2P24043 3122 aaKnown RBP3.66□□□□□ -1.82
USP40-211ENST00000464956 PRUNE2Q8WUY3 3088 aa3.66□□□□□ -1.82
USP40-211ENST00000464956 COL3A1P02461 1466 aaPredicted RBP3.66□□□□□ -1.82
USP40-211ENST00000464956 CACNA1SQ13698 1873 aa3.65□□□□□ -1.82
USP40-211ENST00000464956 POTEB3A0JP26 581 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 WNT10BO00744 389 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 A1BGP04217 495 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 IRS1P35568 1242 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 SNAPC2Q13487 334 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 RAB30Q15771 203 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 NBPF20Q3BBV1 942 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 POTEBQ6S5H4 581 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 SAMD1Q6SPF0 538 aaPredicted RBP3.65□□□□□ -1.83
USP40-211ENST00000464956 NKD2Q969F2 451 aaPredicted RBP3.65□□□□□ -1.83
USP40-211ENST00000464956 FSD1Q9BTV5 496 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 PBX4Q9BYU1 374 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 SENP6Q9GZR1 1112 aaPredicted RBP3.65□□□□□ -1.83
USP40-211ENST00000464956 DEFB129Q9H1M3 183 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 GGNBP2Q9H3C7 697 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 SLC28A3Q9HAS3 691 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 NSFL1CQ9UNZ2 370 aaKnown RBP3.65□□□□□ -1.83
USP40-211ENST00000464956 CSADQ9Y600 493 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 ABCC4O15439 1325 aa3.65□□□□□ -1.83
USP40-211ENST00000464956 SASH1O94885 1247 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 ZIC2O95409 532 aaPredicted RBP3.64□□□□□ -1.83
USP40-211ENST00000464956 DSG3P32926 999 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 MMP14P50281 582 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 ATN1P54259 1190 aaPredicted RBP3.64□□□□□ -1.83
USP40-211ENST00000464956 RTP1P59025 263 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 MCTP2Q6DN12 878 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 FAM178BQ8IXR5 827 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 PBXIP1Q96AQ6 731 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 COA7Q96BR5 231 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 GMLQ99445 158 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 PARK7Q99497 189 aaKnown RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms