RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IGHMBP2P38935 993 aaKnown RBP14.47□□□□□ -0.09
USP54-209ENST00000464635 FOXO4P98177 505 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 EPHA10Q5JZY3 1008 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 CDC37L1Q7L3B6 337 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 SAPCD2Q86UD0 394 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 KIF1BPQ96EK5 621 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 GMLQ99445 158 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 MXD3Q9BW11 206 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 LNPKQ9C0E8 428 aa14.47□□□□□ -0.09
USP54-209ENST00000464635 SRGAP3O43295 1099 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 AOC2O75106 756 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 ZNF280AP59817 542 aaPredicted RBP14.46□□□□□ -0.09
USP54-209ENST00000464635 KRT26Q7Z3Y9 468 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 PLEKHM2Q8IWE5 1019 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 AIDAQ96BJ3 306 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 KAZALD1Q96I82 304 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 GGA3Q9NZ52 723 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 STAP2Q9UGK3 403 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 FBXO3Q9UK99 471 aa14.46□□□□□ -0.09
USP54-209ENST00000464635 USP17L3A6NCW0 530 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 USP17L4A6NCW7 530 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 SNAP23O00161 211 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 CAPN15O75808 1086 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 CHRNDQ07001 517 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 USP17L1Q7RTZ2 530 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 AGBL3Q8NEM8 1001 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 MPHOSPH8Q99549 860 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 COPRSQ9NQ92 184 aa14.45□□□□□ -0.1
USP54-209ENST00000464635 ZNF804BA4D1E1 1349 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 SALL3Q9BXA9 1300 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 ANKRD18BA2A2Z9 1011 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 HSPA8P11142 646 aaKnown RBP14.44□□□□□ -0.1
USP54-209ENST00000464635 ECE1P42892 770 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 CTCFP49711 727 aaPredicted RBP14.44□□□□□ -0.1
USP54-209ENST00000464635 LBX1P52954 281 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 DACT2Q5SW24 774 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 PODNQ7Z5L7 613 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 DCPSQ96C86 337 aaKnown RBP14.44□□□□□ -0.1
USP54-209ENST00000464635 SUCLG2Q96I99 432 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 LEMD3Q9Y2U8 911 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 CHMP3Q9Y3E7 222 aa14.44□□□□□ -0.1
USP54-209ENST00000464635 IRS2Q9Y4H2 1338 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 TAF5LO75529 589 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 USP17L8P0C7I0 530 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 LMBR1LQ6UX01 489 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 HELBQ8NG08 1087 aaPredicted RBP14.43□□□□□ -0.1
USP54-209ENST00000464635 FBXW7Q969H0 707 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 ZNF594Q96JF6 807 aaPredicted RBP14.43□□□□□ -0.1
USP54-209ENST00000464635 BICC1Q9H694 974 aaKnown RBP14.43□□□□□ -0.1
USP54-209ENST00000464635 SCAF8Q9UPN6 1271 aaKnown RBP14.43□□□□□ -0.1
USP54-209ENST00000464635 ECM29Q5VYK3 1845 aa14.43□□□□□ -0.1
USP54-209ENST00000464635 ARAP2Q8WZ64 1704 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 SURF6O75683 361 aaKnown RBP14.42□□□□□ -0.1
USP54-209ENST00000464635 MAP2K1Q02750 393 aaPredicted RBP14.42□□□□□ -0.1
USP54-209ENST00000464635 IFIT5Q13325 482 aaKnown RBP14.42□□□□□ -0.1
USP54-209ENST00000464635 SCARF1Q14162 830 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 ANGEL2Q5VTE6 544 aaKnown RBP14.42□□□□□ -0.1
USP54-209ENST00000464635 RHPN1Q8TCX5 695 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 ANKRD2Q9GZV1 360 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 COA1Q9GZY4 146 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 MYOZ2Q9NPC6 264 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 PRDM10Q9NQV6 1147 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 PAPPA2Q9BXP8 1791 aa14.42□□□□□ -0.1
USP54-209ENST00000464635 KCNJ4P48050 445 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 HUNKP57058 714 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 SKAP1Q86WV1 359 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 SULF1Q8IWU6 871 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 CDCA5Q96FF9 252 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 HHIPL1Q96JK4 782 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 ZIC5Q96T25 663 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 GBA2Q9HCG7 927 aaPredicted RBP14.41□□□□□ -0.1
USP54-209ENST00000464635 TSKSQ9UJT2 592 aa14.41□□□□□ -0.1
USP54-209ENST00000464635 PDE1AP54750 535 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 G3BP1Q13283 466 aaKnown RBP eCLIP14.4□□□□□ -0.1
USP54-209ENST00000464635 NBPF9Q3BBW0 867 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 TTC22Q5TAA0 569 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 TICAM2Q86XR7 235 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 EXOC6BQ9Y2D4 811 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 TTC41PQ6P2S7 1318 aa14.4□□□□□ -0.1
USP54-209ENST00000464635 SASH1O94885 1247 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 RFX5P48382 616 aaPredicted RBP14.39□□□□□ -0.11
USP54-209ENST00000464635 GTF2IP78347 998 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 STRIP1Q5VSL9 837 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 CLASRPQ8N2M8 674 aaKnown RBP14.39□□□□□ -0.11
USP54-209ENST00000464635 CD209Q9NNX6 404 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 GPR108Q9NPR9 543 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 CASP8AP2Q9UKL3 1982 aa14.39□□□□□ -0.11
USP54-209ENST00000464635 EPB41L2O43491 1005 aaKnown RBP14.38□□□□□ -0.11
USP54-209ENST00000464635 CIAO1O76071 339 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 MAP2K2P36507 400 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 TTLL5Q6EMB2 1281 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 KIAA0825Q8IV33 1275 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 PUS3Q9BZE2 481 aaKnown RBP14.38□□□□□ -0.11
USP54-209ENST00000464635 UPF2Q9HAU5 1272 aaKnown RBP14.38□□□□□ -0.11
USP54-209ENST00000464635 AKAP11Q9UKA4 1901 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 MYO3BQ8WXR4 1341 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 PITPNM2Q9BZ72 1349 aa14.38□□□□□ -0.11
USP54-209ENST00000464635 FAM155AB1AL88 458 aaPredicted RBP14.37□□□□□ -0.11
USP54-209ENST00000464635 MX1P20591 662 aa14.37□□□□□ -0.11
USP54-209ENST00000464635 PTPN12Q05209 780 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms