RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 MSL1Q68DK7 614 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 C8orf86Q6ZUL3 223 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 ZSCAN1Q8NBB4 408 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 TMEM87AQ8NBN3 555 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 CLEC4MQ9H2X3 399 aaPredicted RBP6.91□□□□□ -1.3
VPS41-210ENST00000462429 ZNF576Q9H609 170 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 SH2B1Q9NRF2 756 aaPredicted RBP6.91□□□□□ -1.3
VPS41-210ENST00000462429 TTF2Q9UNY4 1162 aaKnown RBP6.91□□□□□ -1.3
VPS41-210ENST00000462429 PPME1Q9Y570 386 aa6.91□□□□□ -1.3
VPS41-210ENST00000462429 ST13P50502 369 aaKnown RBP6.9□□□□□ -1.3
VPS41-210ENST00000462429 FAM117BQ6P1L5 589 aa6.9□□□□□ -1.3
VPS41-210ENST00000462429 ANKRD24Q8TF21 1146 aa6.9□□□□□ -1.3
VPS41-210ENST00000462429 H3BRJ5 948 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 SCAMP3O14828 347 aaKnown RBP6.89□□□□□ -1.31
VPS41-210ENST00000462429 NID1P14543 1247 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 EPHA1P21709 976 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 PCDH1Q08174 1060 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 IKBKEQ14164 716 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 MEI1Q5TIA1 1274 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 ADAMTSL4Q6UY14 1074 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 VN1R5Q7Z5H4 357 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 CEP44Q9C0F1 390 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 USP31Q70CQ4 1352 aa6.89□□□□□ -1.31
VPS41-210ENST00000462429 EIF4EBP3O60516 100 aaPredicted RBP6.88□□□□□ -1.31
VPS41-210ENST00000462429 BAG6P46379 1132 aa6.88□□□□□ -1.31
VPS41-210ENST00000462429 ARL4DP49703 201 aa6.88□□□□□ -1.31
VPS41-210ENST00000462429 DDX54Q8TDD1 881 aaKnown RBP6.88□□□□□ -1.31
VPS41-210ENST00000462429 WNT8BQ93098 351 aa6.88□□□□□ -1.31
VPS41-210ENST00000462429 SRA1Q9HD15 236 aaKnown RBP6.88□□□□□ -1.31
VPS41-210ENST00000462429 METTL5Q9NRN9 209 aaKnown RBP6.88□□□□□ -1.31
VPS41-210ENST00000462429 GPN3Q9UHW5 284 aaPredicted RBP6.88□□□□□ -1.31
VPS41-210ENST00000462429 MKL2Q9ULH7 1088 aa6.88□□□□□ -1.31
VPS41-210ENST00000462429 SPDYE3A6NKU9 549 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 LINC01387J3KSC0 135 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 GNB5O14775 395 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 B3GALT4O96024 378 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 ESRRAP11474 423 aaPredicted RBP6.87□□□□□ -1.31
VPS41-210ENST00000462429 TCF3P15923 654 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 HOXB4P17483 251 aaPredicted RBP6.87□□□□□ -1.31
VPS41-210ENST00000462429 CDC25BP30305 580 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 ZNF76P36508 570 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 PIP4K2BP78356 416 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 PPP2R3AQ06190 1150 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 COL9A3Q14050 684 aaPredicted RBP6.87□□□□□ -1.31
VPS41-210ENST00000462429 TRAPPC3LQ5T215 181 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 LDLRAD1Q5T700 205 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 TPTE2Q6XPS3 522 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 SV2BQ7L1I2 683 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 PODNQ7Z5L7 613 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 MAP4K3Q8IVH8 894 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 DTWD1Q8N5C7 304 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 DCAF11Q8TEB1 546 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 NOC4LQ9BVI4 516 aaKnown RBP6.87□□□□□ -1.31
VPS41-210ENST00000462429 SEC31BQ9NQW1 1179 aa6.87□□□□□ -1.31
VPS41-210ENST00000462429 LORP23490 312 aaPredicted RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 SNRPNP63162 240 aaKnown RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 CCDC85BQ15834 202 aaPredicted RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 DMRTC2Q8IXT2 367 aaPredicted RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 NECAB3Q96P71 396 aaPredicted RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 SOX17Q9H6I2 414 aaPredicted RBP6.86□□□□□ -1.31
VPS41-210ENST00000462429 OSGEPQ9NPF4 335 aa6.86□□□□□ -1.31
VPS41-210ENST00000462429 TMEM39AQ9NV64 488 aa6.86□□□□□ -1.31
VPS41-210ENST00000462429 FSCN2O14926 492 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 FBXO24O75426 580 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 RLBP1P12271 317 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 RAC1P63000 192 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 FANCCQ00597 558 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 C19orf57Q0VDD7 668 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 FAAP100Q0VG06 881 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 ZNF423Q2M1K9 1284 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 TXNDC11Q6PKC3 985 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 LINC00114Q6XXX2 140 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 BEND7Q8N7W2 519 aaPredicted RBP6.85□□□□□ -1.31
VPS41-210ENST00000462429 KLHL23Q8NBE8 558 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 SLC7A3Q8WY07 619 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 RNF34Q969K3 372 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 NOP53Q9NZM5 478 aaKnown RBP6.85□□□□□ -1.31
VPS41-210ENST00000462429 SAMM50Q9Y512 469 aa6.85□□□□□ -1.31
VPS41-210ENST00000462429 SOX1O00570 391 aaPredicted RBP6.84□□□□□ -1.31
VPS41-210ENST00000462429 ZNF157P51786 506 aaPredicted RBP6.84□□□□□ -1.31
VPS41-210ENST00000462429 HS2ST1Q7LGA3 356 aa6.84□□□□□ -1.31
VPS41-210ENST00000462429 TRIM11Q96F44 468 aa6.84□□□□□ -1.31
VPS41-210ENST00000462429 PLVAPQ9BX97 442 aa6.84□□□□□ -1.31
VPS41-210ENST00000462429 ADAMTS8Q9UP79 889 aa6.84□□□□□ -1.31
VPS41-210ENST00000462429 FAM181BA6NEQ2 426 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 ENC1O14682 589 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 GSTM4Q03013 218 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 ILDR2Q71H61 639 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 SCARF2Q96GP6 870 aaPredicted RBP6.83□□□□□ -1.32
VPS41-210ENST00000462429 CARD10Q9BWT7 1032 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 IGSF5Q9NSI5 407 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 GGT7Q9UJ14 662 aa6.83□□□□□ -1.32
VPS41-210ENST00000462429 A0A0A0MRY4 1105 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 CELA3AP09093 270 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 NME2P22392 152 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 HDLBPQ00341 1268 aaKnown RBP6.82□□□□□ -1.32
VPS41-210ENST00000462429 TRIM28Q13263 835 aaKnown RBP6.82□□□□□ -1.32
VPS41-210ENST00000462429 AP3B2Q13367 1082 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 PWP1Q13610 501 aa6.82□□□□□ -1.32
VPS41-210ENST00000462429 SUZ12Q15022 739 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms