RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 SYCE3A1L190 88 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 SNAP23O00161 211 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 IDH1O75874 414 aaKnown RBP16.46■□□□□ 0.23
PTPRN-210ENST00000460801 PDE6AP16499 860 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 NASPP49321 788 aaPredicted RBP16.46■□□□□ 0.23
PTPRN-210ENST00000460801 APOBRQ0VD83 1088 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 ZNF532Q9HCE3 1301 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 FIBPO43427 364 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 EVCP57679 992 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 RASGRF1Q13972 1273 aa16.46■□□□□ 0.23
PTPRN-210ENST00000460801 SF3B3Q15393 1217 aaKnown RBP16.46■□□□□ 0.23
PTPRN-210ENST00000460801 ZNF274Q96GC6 653 aaPredicted RBP16.46■□□□□ 0.23
PTPRN-210ENST00000460801 BTAF1O14981 1849 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 DOCK2Q92608 1830 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 HAND2P61296 217 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 ERFEQ4G0M1 354 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 CDC5LQ99459 802 aaKnown RBP16.45■□□□□ 0.22
PTPRN-210ENST00000460801 RBSNQ9H1K0 784 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 WWC3Q9ULE0 1092 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 SCN7AQ01118 1682 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 CHRNDQ07001 517 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 BCL2L12Q9HB09 334 aa16.45■□□□□ 0.22
PTPRN-210ENST00000460801 COL4A1P02462 1669 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 ZNF213O14771 459 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 RPS6KA4O75676 772 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 CTDNEP1O95476 244 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 PDIA3P30101 505 aaKnown RBP16.44■□□□□ 0.22
PTPRN-210ENST00000460801 CHST3Q7LGC8 479 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 FERMT3Q86UX7 667 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 MB21D2Q8IYB1 491 aaPredicted RBP16.44■□□□□ 0.22
PTPRN-210ENST00000460801 NSUN7Q8NE18 718 aaKnown RBP16.44■□□□□ 0.22
PTPRN-210ENST00000460801 NHSQ6T4R5 1651 aa16.44■□□□□ 0.22
PTPRN-210ENST00000460801 SLC10A5Q5PT55 438 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 NARFQ9UHQ1 456 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 KRT85P78386 507 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 C3orf67Q6ZVT6 689 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 NCOA7Q8NI08 942 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 STRBPQ96SI9 672 aaKnown RBP16.43■□□□□ 0.22
PTPRN-210ENST00000460801 WDR19Q8NEZ3 1342 aa16.43■□□□□ 0.22
PTPRN-210ENST00000460801 PHF14O94880 888 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 MCM5P33992 734 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 BCAMP50895 628 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 HMGN5P82970 282 aaKnown RBP16.42■□□□□ 0.22
PTPRN-210ENST00000460801 MAP3K12Q12852 859 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 TBC1D9BQ66K14 1250 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 FAM43AQ8N2R8 423 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 CHMP4CQ96CF2 233 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 SALL1Q9NSC2 1324 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 AEBP2Q6ZN18 517 aaPredicted RBP16.42■□□□□ 0.22
PTPRN-210ENST00000460801 ANKRD18AQ8IVF6 992 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 DDX11Q96FC9 970 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 NBPF3Q9H094 633 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 ELP1O95163 1332 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 CASZ1Q86V15 1759 aa16.42■□□□□ 0.22
PTPRN-210ENST00000460801 PRC1O43663 620 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 CCT2P78371 535 aaKnown RBP16.41■□□□□ 0.22
PTPRN-210ENST00000460801 ALX1Q15699 326 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 CCDC183Q5T5S1 534 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 FAM173BQ6P4H8 233 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 SMIM5Q71RC9 77 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 FAM184AQ8NB25 1140 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 PPP1R9BQ96SB3 815 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 BSDC1Q9NW68 430 aaPredicted RBP16.41■□□□□ 0.22
PTPRN-210ENST00000460801 A0A1B0GUL6 1792 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 PTPDC1A2A3K4 754 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 ANTXR2P58335 489 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 TTC6Q86TZ1 520 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 AIDAQ96BJ3 306 aa16.41■□□□□ 0.22
PTPRN-210ENST00000460801 RTN4Q9NQC3 1192 aaKnown RBP16.41■□□□□ 0.22
PTPRN-210ENST00000460801 GPHNQ9NQX3 736 aaPredicted RBP16.41■□□□□ 0.22
PTPRN-210ENST00000460801 CCDC173Q0VFZ6 552 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 RESTQ13127 1097 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 BICDL1Q6ZP65 573 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 RALYLQ86SE5 291 aaKnown RBP16.4■□□□□ 0.22
PTPRN-210ENST00000460801 MAGEB6Q8N7X4 407 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 SCAND2PQ9GZW5 306 aaPredicted RBP16.4■□□□□ 0.22
PTPRN-210ENST00000460801 NCOA5Q9HCD5 579 aaKnown RBP16.4■□□□□ 0.22
PTPRN-210ENST00000460801 ZMYM6O95789 1325 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 TAF1P21675 1872 aa16.4■□□□□ 0.22
PTPRN-210ENST00000460801 NAA16Q6N069 864 aaPredicted RBP16.39■□□□□ 0.22
PTPRN-210ENST00000460801 NYXQ9GZU5 481 aa16.39■□□□□ 0.22
PTPRN-210ENST00000460801 ZSCAN16Q9H4T2 348 aaPredicted RBP16.39■□□□□ 0.22
PTPRN-210ENST00000460801 CCNL1Q9UK58 526 aaPredicted RBP16.39■□□□□ 0.22
PTPRN-210ENST00000460801 KIF3AQ9Y496 699 aa16.39■□□□□ 0.22
PTPRN-210ENST00000460801 ZNF804BA4D1E1 1349 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 COL24A1Q17RW2 1714 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 PATL2C9JE40 543 aaKnown RBP16.39■□□□□ 0.21
PTPRN-210ENST00000460801 H3BQV1 296 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 LETM1O95202 739 aaPredicted RBP16.39■□□□□ 0.21
PTPRN-210ENST00000460801 APPP05067 770 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 UBE4AQ14139 1066 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 FAM182BQ5T319 152 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 IFFO2Q5TF58 517 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 TBC1D10CQ8IV04 446 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 KLHL34Q8N239 644 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 ANP32BQ92688 251 aaKnown RBP16.39■□□□□ 0.21
PTPRN-210ENST00000460801 GJD4Q96KN9 370 aaPredicted RBP16.39■□□□□ 0.21
PTPRN-210ENST00000460801 TSPY26PQ9H489 355 aa16.39■□□□□ 0.21
PTPRN-210ENST00000460801 SRP68Q9UHB9 627 aaKnown RBP16.39■□□□□ 0.21
PTPRN-210ENST00000460801 GNPATO15228 680 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms