RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RICTORQ6R327 1708 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 A0A1B0GVL5 298 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 CYP21A2P08686 494 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 TNNT1P13805 278 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 GRM1Q13255 1194 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 MIGA1Q8NAN2 632 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 WASF1Q92558 559 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 CDCA7Q9BWT1 371 aaPredicted RBP13.49□□□□□ -0.25
NPHP4-204ENST00000460696 ZNF652Q9Y2D9 606 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 GPAA1O43292 621 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 UQCRFS1P1P0C7P4 283 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 NECTIN1Q15223 517 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 HSP90AA4PQ58FG1 418 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 ERCC4Q92889 916 aaPredicted RBP13.49□□□□□ -0.25
NPHP4-204ENST00000460696 HAUS7Q99871 368 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 CARD10Q9BWT7 1032 aa13.49□□□□□ -0.25
NPHP4-204ENST00000460696 NIP7Q9Y221 180 aaKnown RBP eCLIP13.49□□□□□ -0.25
NPHP4-204ENST00000460696 SFPQP23246 707 aaKnown RBP eCLIP13.48□□□□□ -0.25
NPHP4-204ENST00000460696 GPR162Q16538 588 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 TRAPPC3LQ5T215 181 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 KLHL10Q6JEL2 608 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 CNNM3Q8NE01 707 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 SPATA31D1Q6ZQQ2 1576 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 SMTNL1A8MU46 457 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 E7EWF7 191 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 TCIRG1Q13488 830 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 MTX1Q13505 466 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.48□□□□□ -0.25
NPHP4-204ENST00000460696 AOPEPQ8N6M6 819 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 GTF3C6Q969F1 213 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 NRKQ7Z2Y5 1582 aa13.48□□□□□ -0.25
NPHP4-204ENST00000460696 B4E1Z4 1266 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 PTPN14Q15678 1187 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 MAGEB6Q8N7X4 407 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 ZKSCAN3Q9BRR0 538 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 SLC4A4Q9Y6R1 1079 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 CCDC196A0A1B0GTZ2 297 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 SPTLC2O15270 562 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 HSPD1P10809 573 aaKnown RBP13.47□□□□□ -0.25
NPHP4-204ENST00000460696 APPBP2Q92624 585 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 CYP7A1P22680 504 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 TMC6Q7Z403 805 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 SPATA31A6Q5VVP1 1343 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 SYKP43405 635 aa13.47□□□□□ -0.25
NPHP4-204ENST00000460696 ERBB4Q15303 1308 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 ERVV-2B6SEH9 535 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 ADORA1P30542 326 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 IQCA1Q86XH1 822 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 KCNG4Q8TDN1 519 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 ZNF526Q8TF50 670 aaPredicted RBP13.46□□□□□ -0.25
NPHP4-204ENST00000460696 SETDB2Q96T68 719 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 C6orf229H3BNL8 230 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 CYP2E1P05181 493 aaPredicted RBP13.46□□□□□ -0.25
NPHP4-204ENST00000460696 WTAPQ15007 396 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 CCDC152Q4G0S7 254 aa13.46□□□□□ -0.25
NPHP4-204ENST00000460696 PAXIP1Q6ZW49 1069 aaPredicted RBP13.46□□□□□ -0.26
NPHP4-204ENST00000460696 CDC5LQ99459 802 aaKnown RBP13.46□□□□□ -0.26
NPHP4-204ENST00000460696 RNF41Q9H4P4 317 aaPredicted RBP13.46□□□□□ -0.26
NPHP4-204ENST00000460696 KIF20BQ96Q89 1820 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 DDIT3P35638 169 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 MYL10Q9BUA6 226 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 IFT172Q9UG01 1749 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 NR1I2O75469 434 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 MBD4O95243 580 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 LMOD1P29536 600 aaPredicted RBP13.45□□□□□ -0.26
NPHP4-204ENST00000460696 CBX8Q9HC52 389 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 CAVIN2O95810 425 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 PI16Q6UXB8 463 aa13.45□□□□□ -0.26
NPHP4-204ENST00000460696 RPGRQ92834 1020 aaKnown RBP13.45□□□□□ -0.26
NPHP4-204ENST00000460696 CCDC47Q96A33 483 aaKnown RBP13.45□□□□□ -0.26
NPHP4-204ENST00000460696 CHGBP05060 677 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 FILIP1LQ4L180 1135 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 ZNF771Q7L3S4 317 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 PDCL2Q8N4E4 241 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 TXLNAP40222 546 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 RBM5P52756 815 aaKnown RBP eCLIP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 POTEAQ6S8J7 498 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 UTP14AQ9BVJ6 771 aaKnown RBP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 PARP3Q9Y6F1 533 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 IPO7O95373 1038 aaKnown RBP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 ATP2B2Q01814 1243 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 SCRN1Q12765 414 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 CCDC102BQ68D86 513 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 CLEC17AQ6ZS10 378 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 CTCFLQ8NI51 663 aaPredicted RBP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 TTC14Q96N46 770 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 LLPHQ9BRT6 129 aaKnown RBP13.44□□□□□ -0.26
NPHP4-204ENST00000460696 DSCC1Q9BVC3 393 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 CLSTN2Q9H4D0 955 aa13.44□□□□□ -0.26
NPHP4-204ENST00000460696 CBFA2T2O43439 604 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 SKILP12757 684 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 PHKBQ93100 1093 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 USP28Q96RU2 1077 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 PDCL3Q9H2J4 239 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 ANKIB1Q9P2G1 1089 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 LOC102724428A0A0B4J2F2 783 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 FGAP02671 866 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 SIK1P57059 783 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 RTN1Q16799 776 aa13.43□□□□□ -0.26
NPHP4-204ENST00000460696 JAG2Q9Y219 1238 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms