RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SCN9AQ15858 1988 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 ZNF609O15014 1411 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 SURF6O75683 361 aaKnown RBP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 YBX3P16989 372 aaKnown RBP eCLIP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 G3BP1Q13283 466 aaKnown RBP eCLIP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 OS9Q13438 667 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 GPR162Q16538 588 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 LRRC24Q50LG9 513 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 METTL24Q5JXM2 366 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 DPP8Q6V1X1 898 aaPredicted RBP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 ATG9AQ7Z3C6 839 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 ERC1Q8IUD2 1116 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 PSMD1Q99460 953 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 PUS3Q9BZE2 481 aaKnown RBP10.83□□□□□ -0.68
SYNE1-214ENST00000454018 ANKIB1Q9P2G1 1089 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 AK9Q5TCS8 1911 aa10.83□□□□□ -0.68
SYNE1-214ENST00000454018 GRIN3BO60391 1043 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 TIE1P35590 1138 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 SH3D19Q5HYK7 790 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 OLFM4Q6UX06 510 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 MPNDQ8N594 471 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 VGLL2Q8N8G2 317 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 SUPT20HQ8NEM7 779 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 OXER1Q8TDS5 423 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 TAOK3Q9H2K8 898 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 GGA1Q9UJY5 639 aa10.82□□□□□ -0.68
SYNE1-214ENST00000454018 NSFL1CQ9UNZ2 370 aaKnown RBP10.82□□□□□ -0.68
SYNE1-214ENST00000454018 MYH7P12883 1935 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 AKAP11Q9UKA4 1901 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 MED23Q9ULK4 1368 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 KIF3CO14782 793 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 UFL1O94874 794 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 ATP2B4P23634 1241 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 GPSM2P81274 684 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 FKBP4Q02790 459 aaKnown RBP eCLIP10.81□□□□□ -0.68
SYNE1-214ENST00000454018 PTGDRQ13258 359 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 SLC51AQ86UW1 340 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 RTFDC1Q9BY42 306 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-214ENST00000454018 RWDD1Q9H446 243 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-214ENST00000454018 CEP126Q9P2H0 1117 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 EXOC6BQ9Y2D4 811 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 LEMD3Q9Y2U8 911 aa10.81□□□□□ -0.68
SYNE1-214ENST00000454018 NFKBIEO00221 500 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 RAB11FIP3O75154 756 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 PDE8BO95263 885 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 KCNJ4P48050 445 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 PUM3Q15397 648 aaKnown RBP10.8□□□□□ -0.68
SYNE1-214ENST00000454018 GCC1Q96CN9 775 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 POM121Q96HA1 1249 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 EYA3Q99504 573 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 DCTPP1Q9H773 170 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 ZNF804BA4D1E1 1349 aa10.8□□□□□ -0.68
SYNE1-214ENST00000454018 TAF5LO75529 589 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 UBE4AQ14139 1066 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 TBC1D16Q8TBP0 767 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 KIF1BPQ96EK5 621 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 VPS33BQ9H267 617 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 AKAP2Q9Y2D5 859 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 DOCK2Q92608 1830 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 COL4A5P29400 1685 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 C6orf229H3BNL8 230 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 SASH1O94885 1247 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 SLC5A1P13866 664 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 TFCP2Q12800 502 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 ATP2B3Q16720 1220 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 ARHGAP27Q6ZUM4 889 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 HELBQ8NG08 1087 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-214ENST00000454018 RHPN1Q8TCX5 695 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 LRRCC1Q9C099 1032 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 GPR108Q9NPR9 543 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 BMP2KQ9NSY1 1161 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-214ENST00000454018 POLLQ9UGP5 575 aa10.79□□□□□ -0.68
SYNE1-214ENST00000454018 MYO5AQ9Y4I1 1855 aaKnown RBP10.78□□□□□ -0.68
SYNE1-214ENST00000454018 UTRNP46939 3433 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 MAST2Q6P0Q8 1798 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 IFIT1P09914 478 aaKnown RBP10.78□□□□□ -0.68
SYNE1-214ENST00000454018 FGFR2P21802 821 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 RASSF7Q02833 373 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 KIAA2012Q0VF49 1180 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 C15orf52Q6ZUT6 534 aaKnown RBP10.78□□□□□ -0.68
SYNE1-214ENST00000454018 SMC5Q8IY18 1101 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 LPIN2Q92539 896 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 TMUB1Q9BVT8 246 aa10.78□□□□□ -0.68
SYNE1-214ENST00000454018 A0A1B0GUL7 405 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 PPIP5K2O43314 1243 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 LMNB1P20700 586 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 IARSP41252 1262 aaKnown RBP10.77□□□□□ -0.69
SYNE1-214ENST00000454018 WASHC4Q2M389 1173 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 TNNI3KQ59H18 835 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 CLASRPQ8N2M8 674 aaKnown RBP10.77□□□□□ -0.69
SYNE1-214ENST00000454018 PDCD7Q8N8D1 485 aaKnown RBP10.77□□□□□ -0.69
SYNE1-214ENST00000454018 FPGT-TNNI3KV9GXZ4 949 aa10.77□□□□□ -0.69
SYNE1-214ENST00000454018 IRS2Q9Y4H2 1338 aa10.76□□□□□ -0.69
SYNE1-214ENST00000454018 IGHDP01880 384 aa10.76□□□□□ -0.69
SYNE1-214ENST00000454018 AOC3Q16853 763 aa10.76□□□□□ -0.69
SYNE1-214ENST00000454018 ZNF804AQ7Z570 1209 aa10.76□□□□□ -0.69
SYNE1-214ENST00000454018 CCDC136Q96JN2 1154 aa10.76□□□□□ -0.69
SYNE1-214ENST00000454018 ZC3H12CQ9C0D7 883 aaKnown RBP10.76□□□□□ -0.69
SYNE1-214ENST00000454018 ZNF277Q9NRM2 450 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-214ENST00000454018 ECM29Q5VYK3 1845 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms