RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 ARL10Q8N8L6 244 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 CTCFLQ8NI51 663 aaPredicted RBP3.22□□□□□ -1.89
LIG4-203ENST00000442234 SMARCE1Q969G3 411 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 ERO1AQ96HE7 468 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 KIF2CQ99661 725 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 RWDD1Q9H446 243 aaPredicted RBP3.22□□□□□ -1.89
LIG4-203ENST00000442234 GNL3LQ9NVN8 582 aaKnown RBP3.22□□□□□ -1.89
LIG4-203ENST00000442234 CHCHD3Q9NX63 227 aaKnown RBP3.22□□□□□ -1.89
LIG4-203ENST00000442234 ZNF215Q9UL58 517 aaPredicted RBP3.22□□□□□ -1.89
LIG4-203ENST00000442234 COG6Q9Y2V7 657 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 SPATA31A1Q5TZJ5 1347 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 SPATA31A5Q5VU36 1347 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 SPATA31A7Q8IWB4 1347 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 ATP7AQ04656 1500 aa3.22□□□□□ -1.89
LIG4-203ENST00000442234 MYO18BQ8IUG5 2567 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 FGD6Q6ZV73 1430 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 PPP1R3GB7ZBB8 358 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 BHMG1C9JSJ3 638 aaPredicted RBP3.21□□□□□ -1.89
LIG4-203ENST00000442234 RAD17O75943 681 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 GBP2P32456 591 aaPredicted RBP3.21□□□□□ -1.89
LIG4-203ENST00000442234 CDR1P51861 262 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 TEFQ10587 303 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 PDCD2Q16342 344 aaPredicted RBP3.21□□□□□ -1.89
LIG4-203ENST00000442234 SLC4A8Q2Y0W8 1093 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 WDR78Q5VTH9 848 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 ARMC3Q5W041 872 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 SUGP1Q8IWZ8 645 aaKnown RBP3.21□□□□□ -1.89
LIG4-203ENST00000442234 EFCAB13Q8IY85 973 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 TEX11Q8IYF3 940 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 CCAR2Q8N163 923 aaKnown RBP3.21□□□□□ -1.89
LIG4-203ENST00000442234 LARGE2Q8N3Y3 721 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 CLUAP1Q96AJ1 413 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 CCDC87Q9NVE4 849 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 ZNF446Q9NWS9 450 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 EMILIN1Q9Y6C2 1016 aa3.21□□□□□ -1.89
LIG4-203ENST00000442234 ERBB3P21860 1342 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 EP300Q09472 2414 aaPredicted RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6CA6NDK9 693 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6BA6NDN3 693 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6L19H0YKK7 550 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 AP1G2O75843 785 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6DP0CG33 693 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 PAX3P23760 479 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 UVSSAQ2YD98 709 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 USPL1Q5W0Q7 1092 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 TADA2BQ86TJ2 420 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 CEP57Q86XR8 500 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 KIAA1524Q8TCG1 905 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 DPF3Q92784 378 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 SPTLC3Q9NUV7 552 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6AQ9NYA3 693 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 ODF2LQ9ULJ1 636 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 PYCARDQ9ULZ3 195 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 PDZRN3Q9UPQ7 1066 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 MAGI2Q86UL8 1455 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 CLTCQ00610 1675 aaKnown RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 CAMSAP2Q08AD1 1489 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 TRAF5O00463 557 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 HRO43593 1189 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 AOC2O75106 756 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 TOMM70O94826 608 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 KIAA0754O94854 1291 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 ANXA1P04083 346 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 HCLS1P14317 486 aaPredicted RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 RANBP1P43487 201 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 LIG3P49916 1009 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 GSCP56915 257 aaPredicted RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 ST5P78524 1137 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 ARHGAP29Q52LW3 1261 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 HOMER1Q86YM7 354 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 MIEF2Q96C03 454 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 SRRTQ9BXP5 876 aaKnown RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 PIM2Q9P1W9 311 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 SOS2Q07890 1332 aaPredicted RBP3.21□□□□□ -1.9
LIG4-203ENST00000442234 KIF7Q2M1P5 1343 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 C1orf167Q5SNV9 1468 aa3.21□□□□□ -1.9
LIG4-203ENST00000442234 A0A087WUV0 522 aaPredicted RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 VEGFAP15692 232 aaPredicted RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 CASTP20810 708 aaKnown RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 ADCY2Q08462 1091 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 ANKRD23Q86SG2 305 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 TAX1BP1Q86VP1 789 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 MSL3Q8N5Y2 521 aaKnown RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 ATL2Q8NHH9 583 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 TRIM5Q9C035 493 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 TMEM63CQ9P1W3 806 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 VPS18Q9P253 973 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 BRD4O60885 1362 aaPredicted RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 MYOM3Q5VTT5 1437 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 GOLGA6L10A6NI86 522 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 H0YIN7 160 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 IGHDP01880 384 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 PNMA6AP0CW24 399 aaPredicted RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 EZRP15311 586 aaKnown RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 APLP1P51693 650 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 EIF5P55010 431 aaKnown RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 SMC1AQ14683 1233 aaKnown RBP3.2□□□□□ -1.9
LIG4-203ENST00000442234 HDGFL1Q5TGJ6 251 aa3.2□□□□□ -1.9
LIG4-203ENST00000442234 ANKRD45Q5TZF3 282 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms