RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ARHGAP45Q92619 1136 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 FBXW7Q969H0 707 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 LEMD3Q9Y2U8 911 aa15.26■□□□□ 0.03
PTPRF-208ENST00000437607 ZNF804BA4D1E1 1349 aa15.25■□□□□ 0.03
PTPRF-208ENST00000437607 IRS2Q9Y4H2 1338 aa15.25■□□□□ 0.03
PTPRF-208ENST00000437607 PDE3AQ14432 1141 aa15.25■□□□□ 0.03
PTPRF-208ENST00000437607 CTU1Q7Z7A3 348 aaKnown RBP15.25■□□□□ 0.03
PTPRF-208ENST00000437607 DZIP1LQ8IYY4 767 aaKnown RBP15.25■□□□□ 0.03
PTPRF-208ENST00000437607 ZBED3Q96IU2 234 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-208ENST00000437607 IGHMBP2P38935 993 aaKnown RBP15.24■□□□□ 0.03
PTPRF-208ENST00000437607 TTLL5Q6EMB2 1281 aa15.24■□□□□ 0.03
PTPRF-208ENST00000437607 OGFOD1Q8N543 542 aa15.24■□□□□ 0.03
PTPRF-208ENST00000437607 CLUAP1Q96AJ1 413 aa15.24■□□□□ 0.03
PTPRF-208ENST00000437607 SNAP23O00161 211 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 TBC1D8O95759 1140 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 TM4SF4P48230 202 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 KIAA0825Q8IV33 1275 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 ANKRD2Q9GZV1 360 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 SSC5DA1L4H1 1573 aa15.23■□□□□ 0.03
PTPRF-208ENST00000437607 GTF2IP78347 998 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 PTPN12Q05209 780 aaKnown RBP15.22■□□□□ 0.03
PTPRF-208ENST00000437607 CHRNDQ07001 517 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 TTLL12Q14166 644 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-208ENST00000437607 C20orf194Q5TEA3 1177 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 ITPRIPQ8IWB1 547 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 CERS5Q8N5B7 392 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 LINS1Q8NG48 757 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 PANK1Q8TE04 598 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 ZNF296Q8WUU4 475 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-208ENST00000437607 DNAAF4Q8WXU2 420 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 FZD1Q9UP38 647 aa15.22■□□□□ 0.03
PTPRF-208ENST00000437607 MKI67P46013 3256 aaKnown RBP15.21■□□□□ 0.03
PTPRF-208ENST00000437607 RBBP6Q7Z6E9 1792 aaKnown RBP15.21■□□□□ 0.03
PTPRF-208ENST00000437607 COL1A1P02452 1464 aaPredicted RBP15.21■□□□□ 0.03
PTPRF-208ENST00000437607 MMP14P50281 582 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 FOXO4P98177 505 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 MKRN3Q13064 507 aaKnown RBP15.21■□□□□ 0.03
PTPRF-208ENST00000437607 PRKG1Q13976 671 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 CRBNQ96SW2 442 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 MPHOSPH8Q99549 860 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 R3HDMLQ9H3Y0 253 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 CD209Q9NNX6 404 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 HPS5Q9UPZ3 1129 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 TNNQ9UQP3 1299 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 PCDHAC2Q9Y5I4 1007 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 GTF3C3Q9Y5Q9 886 aa15.21■□□□□ 0.03
PTPRF-208ENST00000437607 MYH13Q9UKX3 1938 aa15.2■□□□□ 0.02
PTPRF-208ENST00000437607 TAF5LO75529 589 aa15.2■□□□□ 0.02
PTPRF-208ENST00000437607 RLBP1P12271 317 aa15.2■□□□□ 0.02
PTPRF-208ENST00000437607 MVPQ14764 893 aaKnown RBP15.2■□□□□ 0.02
PTPRF-208ENST00000437607 LDLRAD1Q5T700 205 aa15.2■□□□□ 0.02
PTPRF-208ENST00000437607 APOBEC3FQ8IUX4 373 aaKnown RBP15.2■□□□□ 0.02
PTPRF-208ENST00000437607 BRCA2P51587 3418 aa15.2■□□□□ 0.02
PTPRF-208ENST00000437607 NF2P35240 595 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 ERICH6BQ5W0A0 696 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 SLC4A10Q6U841 1118 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 C15orf52Q6ZUT6 534 aaKnown RBP15.19■□□□□ 0.02
PTPRF-208ENST00000437607 TMEM57Q8N5G2 664 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 HELBQ8NG08 1087 aaPredicted RBP15.19■□□□□ 0.02
PTPRF-208ENST00000437607 HDAC9Q9UKV0 1011 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 COG6Q9Y2V7 657 aa15.19■□□□□ 0.02
PTPRF-208ENST00000437607 AOX1Q06278 1338 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 ANKRD18BA2A2Z9 1011 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 F6X3S4 739 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 GPR25O00155 361 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 NOM1Q5C9Z4 860 aaKnown RBP15.18■□□□□ 0.02
PTPRF-208ENST00000437607 MTMR14Q8NCE2 650 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 CFHR5Q9BXR6 569 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 DDX19BQ9UMR2 479 aa15.18■□□□□ 0.02
PTPRF-208ENST00000437607 ANGEL1Q9UNK9 670 aaKnown RBP15.18■□□□□ 0.02
PTPRF-208ENST00000437607 IL1R1P14778 569 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 KCNJ4P48050 445 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 EPHA10Q5JZY3 1008 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 BEND3Q5T5X7 828 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 SPRYD7Q5W111 196 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 ARMC9Q7Z3E5 817 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 EXOC6Q8TAG9 804 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 DEFB129Q9H1M3 183 aa15.17■□□□□ 0.02
PTPRF-208ENST00000437607 CHMP4BQ9H444 224 aaKnown RBP15.17■□□□□ 0.02
PTPRF-208ENST00000437607 SREBF2Q12772 1141 aa15.16■□□□□ 0.02
PTPRF-208ENST00000437607 DLGAP5Q15398 846 aa15.16■□□□□ 0.02
PTPRF-208ENST00000437607 PKN2Q16513 984 aaKnown RBP15.16■□□□□ 0.02
PTPRF-208ENST00000437607 MAP3K11Q16584 847 aa15.16■□□□□ 0.02
PTPRF-208ENST00000437607 ZNF594Q96JF6 807 aaPredicted RBP15.16■□□□□ 0.02
PTPRF-208ENST00000437607 KIAA0100Q14667 2235 aaKnown RBP15.15■□□□□ 0.02
PTPRF-208ENST00000437607 F8W031 263 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-208ENST00000437607 IFIT5Q13325 482 aaKnown RBP15.15■□□□□ 0.02
PTPRF-208ENST00000437607 CFAP100Q494V2 611 aa15.15■□□□□ 0.02
PTPRF-208ENST00000437607 LMBR1LQ6UX01 489 aa15.15■□□□□ 0.02
PTPRF-208ENST00000437607 CLMNQ96JQ2 1002 aa15.15■□□□□ 0.02
PTPRF-208ENST00000437607 PRMT6Q96LA8 375 aaPredicted RBP15.15■□□□□ 0.02
PTPRF-208ENST00000437607 JAG2Q9Y219 1238 aa15.15■□□□□ 0.02
PTPRF-208ENST00000437607 CLRN2A0PK11 232 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 SPDYE2BA6NHP3 402 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 FKTNO75072 461 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 SPDYE6P0CI01 402 aa15.14■□□□□ 0.01
PTPRF-208ENST00000437607 FKBP1AP62942 108 aaKnown RBP15.14■□□□□ 0.01
PTPRF-208ENST00000437607 INTS3Q68E01 1043 aaKnown RBP15.14■□□□□ 0.01
PTPRF-208ENST00000437607 FBXO46Q6PJ61 603 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-208ENST00000437607 SRCIN1Q9C0H9 1055 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms