RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 BCL9LQ86UU0 1499 aa21.87■■□□□ 1.09
CLK1-205ENST00000434813 TPM2P07951 284 aa21.87■■□□□ 1.09
CLK1-205ENST00000434813 PDIA3P30101 505 aaKnown RBP21.87■■□□□ 1.09
CLK1-205ENST00000434813 IMMTQ16891 758 aaKnown RBP21.87■■□□□ 1.09
CLK1-205ENST00000434813 PGBD1Q96JS3 809 aa21.87■■□□□ 1.09
CLK1-205ENST00000434813 TNMDQ9H2S6 317 aa21.87■■□□□ 1.09
CLK1-205ENST00000434813 CLSTN2Q9H4D0 955 aa21.87■■□□□ 1.09
CLK1-205ENST00000434813 ANKRD18BA2A2Z9 1011 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 TERF1P54274 439 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 LDHAL6AQ6ZMR3 332 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 SYNE4Q8N205 404 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 FNBP4Q8N3X1 1017 aaPredicted RBP21.86■■□□□ 1.09
CLK1-205ENST00000434813 VGLL2Q8N8G2 317 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 FAM200AQ8TCP9 573 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 ZBTB1Q9Y2K1 713 aa21.86■■□□□ 1.09
CLK1-205ENST00000434813 TYRO3Q06418 890 aa21.85■■□□□ 1.09
CLK1-205ENST00000434813 ARAP2Q8WZ64 1704 aa21.85■■□□□ 1.09
CLK1-205ENST00000434813 CCT2P78371 535 aaKnown RBP21.85■■□□□ 1.09
CLK1-205ENST00000434813 MRVI1Q9Y6F6 885 aa21.85■■□□□ 1.09
CLK1-205ENST00000434813 ERVV-1B6SEH8 477 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 IRS4O14654 1257 aaPredicted RBP21.84■■□□□ 1.09
CLK1-205ENST00000434813 ADD1P35611 737 aaKnown RBP21.84■■□□□ 1.09
CLK1-205ENST00000434813 MCAMP43121 646 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 PI16Q6UXB8 463 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 BICD2Q8TD16 824 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.84■■□□□ 1.093e-11■□□□□ 10.1
CLK1-205ENST00000434813 PUS7LQ9H0K6 701 aaKnown RBP21.84■■□□□ 1.09
CLK1-205ENST00000434813 NCOA5Q9HCD5 579 aaKnown RBP21.84■■□□□ 1.09
CLK1-205ENST00000434813 FGAP02671 866 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 KIAA2012Q0VF49 1180 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 CAMK4Q16566 473 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 ATL3Q6DD88 541 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 CARMIL3Q8ND23 1372 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 USP21Q9UK80 565 aa21.84■■□□□ 1.09
CLK1-205ENST00000434813 AFF2P51816 1311 aa21.83■■□□□ 1.09
CLK1-205ENST00000434813 IL6STP40189 918 aaPredicted RBP21.83■■□□□ 1.09
CLK1-205ENST00000434813 CHST3Q7LGC8 479 aa21.83■■□□□ 1.09
CLK1-205ENST00000434813 MB21D2Q8IYB1 491 aaPredicted RBP21.83■■□□□ 1.09
CLK1-205ENST00000434813 CNNM1Q9NRU3 951 aa21.83■■□□□ 1.09
CLK1-205ENST00000434813 WDR19Q8NEZ3 1342 aa21.82■■□□□ 1.08
CLK1-205ENST00000434813 GPAA1O43292 621 aa21.82■■□□□ 1.08
CLK1-205ENST00000434813 ZSCAN25Q6NSZ9 544 aa21.82■■□□□ 1.08
CLK1-205ENST00000434813 TRMT112Q9UI30 125 aaKnown RBP21.82■■□□□ 1.08
CLK1-205ENST00000434813 PDE8AO60658 829 aa21.82■■□□□ 1.08
CLK1-205ENST00000434813 NR1I2O75469 434 aa21.82■■□□□ 1.08
CLK1-205ENST00000434813 ADD2P35612 726 aa21.81■■□□□ 1.08
CLK1-205ENST00000434813 HAND2P61296 217 aa21.81■■□□□ 1.08
CLK1-205ENST00000434813 TTF1Q15361 905 aaPredicted RBP21.81■■□□□ 1.08
CLK1-205ENST00000434813 RCOR1Q9UKL0 485 aa21.81■■□□□ 1.08
CLK1-205ENST00000434813 NAP1L2Q9ULW6 460 aaPredicted RBP21.81■■□□□ 1.08
CLK1-205ENST00000434813 UBN2Q6ZU65 1347 aa21.81■■□□□ 1.08
CLK1-205ENST00000434813 AP5Z1O43299 807 aa21.8■■□□□ 1.08
CLK1-205ENST00000434813 PDE8BO95263 885 aa21.8■■□□□ 1.08
CLK1-205ENST00000434813 CKAP2LQ8IYA6 745 aa21.8■■□□□ 1.08
CLK1-205ENST00000434813 PRC1O43663 620 aa21.8■■□□□ 1.08
CLK1-205ENST00000434813 DZIP3Q86Y13 1208 aaKnown RBP21.8■■□□□ 1.08
CLK1-205ENST00000434813 NCOA7Q8NI08 942 aa21.8■■□□□ 1.08
CLK1-205ENST00000434813 ARID4AP29374 1257 aaPredicted RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 ATP6V1AP38606 617 aa21.79■■□□□ 1.08
CLK1-205ENST00000434813 ZNF34Q8IZ26 560 aa21.79■■□□□ 1.08
CLK1-205ENST00000434813 ZNF396Q96N95 335 aaPredicted RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 FDPSP14324 419 aaKnown RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 ANTXR2P58335 489 aa21.79■■□□□ 1.08
CLK1-205ENST00000434813 ZNF772Q68DY9 489 aaPredicted RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 SMARCC1Q92922 1105 aaPredicted RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 AK7Q96M32 723 aa21.79■■□□□ 1.08
CLK1-205ENST00000434813 GPHNQ9NQX3 736 aaPredicted RBP21.79■■□□□ 1.08
CLK1-205ENST00000434813 LOC102724428A0A0B4J2F2 783 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 ZNF213O14771 459 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 FOSBP53539 338 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 SIK1P57059 783 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 UBE3CQ15386 1083 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 RALYLQ86SE5 291 aaKnown RBP21.78■■□□□ 1.08
CLK1-205ENST00000434813 PIBF1Q8WXW3 757 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 USP28Q96RU2 1077 aa21.78■■□□□ 1.08
CLK1-205ENST00000434813 RREB1Q92766 1687 aa21.77■■□□□ 1.08
CLK1-205ENST00000434813 DHX16O60231 1041 aaKnown RBP21.77■■□□□ 1.08
CLK1-205ENST00000434813 ANO6Q4KMQ2 910 aa21.77■■□□□ 1.08
CLK1-205ENST00000434813 C4AP0C0L4 1744 aa21.77■■□□□ 1.08
CLK1-205ENST00000434813 C4BP0C0L5 1744 aa21.77■■□□□ 1.08
CLK1-205ENST00000434813 MROH5Q6ZUA9 1318 aa21.77■■□□□ 1.08
CLK1-205ENST00000434813 CICQ96RK0 1608 aaPredicted RBP21.77■■□□□ 1.07
CLK1-205ENST00000434813 KLF18A0A0U1RQI7 1052 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 UQCRFS1P1P0C7P4 283 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 PLCB2Q00722 1185 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 PUM3Q15397 648 aaKnown RBP21.77■■□□□ 1.07
CLK1-205ENST00000434813 SLC9C2Q5TAH2 1124 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 CCDC102BQ68D86 513 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 PIH1D3Q9NQM4 214 aaKnown RBP21.77■■□□□ 1.07
CLK1-205ENST00000434813 HPS5Q9UPZ3 1129 aa21.77■■□□□ 1.07
CLK1-205ENST00000434813 GOLGA8BA8MQT2 603 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 TPM3P06753 285 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 CEBPZQ03701 1054 aaKnown RBP21.76■■□□□ 1.07
CLK1-205ENST00000434813 SASS6Q6UVJ0 657 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 FTOQ9C0B1 505 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLK1-205ENST00000434813 CBX8Q9HC52 389 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 TBC1D2BQ9UPU7 963 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 R3HCC1Q9Y3T6 440 aaKnown RBP21.76■■□□□ 1.07
CLK1-205ENST00000434813 DOCK2Q92608 1830 aa21.76■■□□□ 1.07
CLK1-205ENST00000434813 MYO5AQ9Y4I1 1855 aaKnown RBP21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms