RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 COPRSQ9NQ92 184 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 TLR7Q9NYK1 1049 aaKnown RBP5.95□□□□□ -1.46
HMGB3-203ENST00000430118 TBX22Q9Y458 520 aa5.95□□□□□ -1.46
HMGB3-203ENST00000430118 ROBO2Q9HCK4 1378 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 CD109Q6YHK3 1445 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 KIF27Q86VH2 1401 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 SSBP05455 408 aaKnown RBP eCLIP5.94□□□□□ -1.46
HMGB3-203ENST00000430118 FCGRTP55899 365 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 MAP3K10Q02779 954 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 PLAURQ03405 335 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 DTHD1Q6ZMT9 781 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 PNMA5Q96PV4 448 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 TCF12Q99081 682 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 GPAMQ9HCL2 828 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 ADAMTS1Q9UHI8 967 aa5.94□□□□□ -1.46
HMGB3-203ENST00000430118 SUPT16HQ9Y5B9 1047 aaKnown RBP5.94□□□□□ -1.46
HMGB3-203ENST00000430118 AXIN1O15169 862 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 SASH3O75995 380 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 CYP2E1P05181 493 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 GBP2P32456 591 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 NRLP54845 237 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 LMNB2Q03252 620 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 TNP2Q05952 138 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 SERINC3Q13530 473 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 NEUROD1Q13562 356 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 PCSK7Q16549 785 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 FAM182BQ5T319 152 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 ZNF746Q6NUN9 644 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 LRP10Q7Z4F1 713 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 CCDC84Q86UT8 332 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 TMEM102Q8N9M5 508 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 PMFBP1Q8TBY8 1022 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 ZSWIM4Q9H7M6 989 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 SIRPGQ9P1W8 387 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 KANSL3Q9P2N6 904 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.93□□□□□ -1.46
HMGB3-203ENST00000430118 PHLDB1Q86UU1 1377 aa5.93□□□□□ -1.46
HMGB3-203ENST00000430118 ADAMTSL3P82987 1691 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 SENP3-EIF4A1A0A087X0R7 540 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 ANKRD62A6NC57 917 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 GREM1O60565 184 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 TARSP26639 723 aaKnown RBP5.92□□□□□ -1.46
HMGB3-203ENST00000430118 LIG3P49916 1009 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 DIEXFQ68CQ4 756 aaKnown RBP5.92□□□□□ -1.46
HMGB3-203ENST00000430118 SDE2Q6IQ49 451 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 NCAPG2Q86XI2 1143 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 ANKRD13AQ8IZ07 590 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 FAM9AQ8IZU1 332 aaPredicted RBP5.92□□□□□ -1.46
HMGB3-203ENST00000430118 PHC3Q8NDX5 983 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 ZNF296Q8WUU4 475 aaPredicted RBP5.92□□□□□ -1.46
HMGB3-203ENST00000430118 GAS2L1Q99501 681 aaPredicted RBP5.92□□□□□ -1.46
HMGB3-203ENST00000430118 OSMRQ99650 979 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 ZKSCAN3Q9BRR0 538 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 LRRC3Q9BY71 257 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 LATS2Q9NRM7 1088 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 NDFIP2Q9NV92 336 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 MARK1Q9P0L2 795 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 DACH1Q9UI36 760 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 DNMT3LQ9UJW3 386 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 MADDQ8WXG6 1647 aa5.92□□□□□ -1.46
HMGB3-203ENST00000430118 POGZQ7Z3K3 1410 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 BCORL1Q5H9F3 1711 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 ARAP3Q8WWN8 1544 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 SFSWAPQ12872 951 aaKnown RBP5.91□□□□□ -1.46
HMGB3-203ENST00000430118 UBAP2LQ14157 1087 aaKnown RBP5.91□□□□□ -1.46
HMGB3-203ENST00000430118 SCARA3Q6AZY7 606 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 AGMOQ6ZNB7 445 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 TRIM46Q7Z4K8 759 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 CEP120Q8N960 986 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 MRFAP1L1Q96HT8 127 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 EAF1Q96JC9 268 aaPredicted RBP5.91□□□□□ -1.46
HMGB3-203ENST00000430118 SPACA7Q96KW9 195 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 CNTNAP3BQ96NU0 1288 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 CNTNAP3Q9BZ76 1288 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 NUCKS1Q9H1E3 243 aaKnown RBP5.91□□□□□ -1.46
HMGB3-203ENST00000430118 TMX1Q9H3N1 280 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 DZANK1Q9NVP4 752 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 ZFATQ9P243 1243 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 AKAP2Q9Y2D5 859 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 SAMM50Q9Y512 469 aa5.91□□□□□ -1.46
HMGB3-203ENST00000430118 ARID4BQ4LE39 1312 aaPredicted RBP5.91□□□□□ -1.46
HMGB3-203ENST00000430118 KIAA0556O60303 1618 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 FIGNL2A6NMB9 653 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 KHNYNO15037 678 aaKnown RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 MAPTP10636 758 aaKnown RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 NFKB1P19838 968 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 GARTP22102 1010 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 NASPP49321 788 aaPredicted RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 GPLD1P80108 840 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 SPEM2Q0P670 501 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 TNNI3KQ59H18 835 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 EGFLAMQ63HQ2 1017 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 ILDR2Q71H61 639 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 DHX32Q7L7V1 743 aaKnown RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 SLITRK4Q8IW52 837 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 ZFP42Q96MM3 310 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 NECAB3Q96P71 396 aaPredicted RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 PIF1Q9H611 641 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 ZNF408Q9H9D4 720 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 GMPR2Q9P2T1 348 aaKnown RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms