RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SCN9AQ15858 1988 aa16.35■□□□□ 0.21
PRPF39-202ENST00000424478 MYH13Q9UKX3 1938 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 IDH1O75874 414 aaKnown RBP16.34■□□□□ 0.21
PRPF39-202ENST00000424478 GTF2IP78347 998 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 ZNF804AQ7Z570 1209 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 LARGE2Q8N3Y3 721 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 MED23Q9ULK4 1368 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 SEC62Q99442 399 aaKnown RBP16.34■□□□□ 0.21
PRPF39-202ENST00000424478 TAOK3Q9H2K8 898 aa16.34■□□□□ 0.21
PRPF39-202ENST00000424478 CCDC88AQ3V6T2 1871 aa16.33■□□□□ 0.21
PRPF39-202ENST00000424478 F8W031 263 aaPredicted RBP16.33■□□□□ 0.21
PRPF39-202ENST00000424478 C8orf34Q49A92 452 aa16.33■□□□□ 0.21
PRPF39-202ENST00000424478 RTKN2Q8IZC4 609 aa16.33■□□□□ 0.21
PRPF39-202ENST00000424478 YDJCA8MPS7 323 aa16.33■□□□□ 0.2
PRPF39-202ENST00000424478 ECE2O60344 883 aa16.33■□□□□ 0.2
PRPF39-202ENST00000424478 PRDX5P30044 214 aa16.33■□□□□ 0.2
PRPF39-202ENST00000424478 FAM227BQ96M60 508 aa16.33■□□□□ 0.2
PRPF39-202ENST00000424478 FER1L6Q2WGJ9 1857 aa16.33■□□□□ 0.2
PRPF39-202ENST00000424478 RAD17O75943 681 aa16.32■□□□□ 0.2
PRPF39-202ENST00000424478 UQCRFS1P1P0C7P4 283 aa16.32■□□□□ 0.2
PRPF39-202ENST00000424478 GPR162Q16538 588 aa16.32■□□□□ 0.2
PRPF39-202ENST00000424478 CWC27Q6UX04 472 aaKnown RBP16.32■□□□□ 0.2
PRPF39-202ENST00000424478 CNTROBQ8N137 903 aa16.32■□□□□ 0.2
PRPF39-202ENST00000424478 TDRD7Q8NHU6 1098 aaKnown RBP16.32■□□□□ 0.2
PRPF39-202ENST00000424478 RTFDC1Q9BY42 306 aaPredicted RBP16.32■□□□□ 0.2
PRPF39-202ENST00000424478 AOX1Q06278 1338 aa16.32■□□□□ 0.2
PRPF39-202ENST00000424478 GNL3LQ9NVN8 582 aaKnown RBP16.32■□□□□ 0.2
PRPF39-202ENST00000424478 KIAA2012Q0VF49 1180 aa16.31■□□□□ 0.2
PRPF39-202ENST00000424478 EYA3Q99504 573 aa16.31■□□□□ 0.2
PRPF39-202ENST00000424478 CCDC129Q6ZRS4 1044 aa16.31■□□□□ 0.2
PRPF39-202ENST00000424478 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
PRPF39-202ENST00000424478 CC2D2BQ6DHV5 1058 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 ARFGEF1Q9Y6D6 1849 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 EVI5LQ96CN4 794 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 PSMD1Q99460 953 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 LRP2BPQ9P2M1 347 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 A0A0D9SFI3 127 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 CERS5Q8N5B7 392 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 RAI14Q9P0K7 980 aa16.3■□□□□ 0.2
PRPF39-202ENST00000424478 IL1R1P14778 569 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 NMIQ13287 307 aaPredicted RBP16.29■□□□□ 0.2
PRPF39-202ENST00000424478 TTLL5Q6EMB2 1281 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 ZNF384Q8TF68 577 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 ZBTB12Q9Y330 459 aaPredicted RBP16.29■□□□□ 0.2
PRPF39-202ENST00000424478 CHMLP26374 656 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 DIXDC1Q155Q3 683 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 MFSD14BQ5SR56 506 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 C15orf52Q6ZUT6 534 aaKnown RBP16.29■□□□□ 0.2
PRPF39-202ENST00000424478 KBTBD3Q8NAB2 608 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 COA1Q9GZY4 146 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 DENND2AQ9ULE3 1009 aa16.29■□□□□ 0.2
PRPF39-202ENST00000424478 SLC9C2Q5TAH2 1124 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 ADGRA1Q86SQ6 560 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 MAGEB6Q8N7X4 407 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 ZNF512BQ96KM6 892 aaPredicted RBP16.28■□□□□ 0.2
PRPF39-202ENST00000424478 PCDHAC2Q9Y5I4 1007 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 CDC45O75419 566 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 MIGA1Q8NAN2 632 aa16.28■□□□□ 0.2
PRPF39-202ENST00000424478 SCNN1DP51172 638 aa16.27■□□□□ 0.2
PRPF39-202ENST00000424478 MFAP1P55081 439 aaKnown RBP16.27■□□□□ 0.2
PRPF39-202ENST00000424478 SOGA3Q5TF21 947 aa16.27■□□□□ 0.2
PRPF39-202ENST00000424478 ZNF589Q86UQ0 364 aaPredicted RBP16.27■□□□□ 0.19
PRPF39-202ENST00000424478 KIAA0825Q8IV33 1275 aa16.27■□□□□ 0.19
PRPF39-202ENST00000424478 SUPT20HQ8NEM7 779 aa16.27■□□□□ 0.19
PRPF39-202ENST00000424478 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.27■□□□□ 0.19
PRPF39-202ENST00000424478 DIAPH3Q9NSV4 1193 aa16.27■□□□□ 0.19
PRPF39-202ENST00000424478 SHTN1A0MZ66 631 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 ZNF532Q9HCE3 1301 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 NIM1KQ8IY84 436 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 ADAMTSL1Q8N6G6 1762 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 PDE6AP16499 860 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 MECOMQ03112 1051 aa16.26■□□□□ 0.19
PRPF39-202ENST00000424478 PUS7LQ9H0K6 701 aaKnown RBP16.26■□□□□ 0.19
PRPF39-202ENST00000424478 M0R2C6 588 aa16.25■□□□□ 0.19
PRPF39-202ENST00000424478 PSMD14O00487 310 aa16.25■□□□□ 0.19
PRPF39-202ENST00000424478 OSBP2Q969R2 916 aa16.25■□□□□ 0.19
PRPF39-202ENST00000424478 CXCL9Q07325 125 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 JDP2Q8WYK2 163 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 GJA3Q9Y6H8 435 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 PODNQ7Z5L7 613 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 BACH2Q9BYV9 841 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 RNF181Q9P0P0 153 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 MYH7P12883 1935 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 ERICH6Q7L0X2 663 aa16.24■□□□□ 0.19
PRPF39-202ENST00000424478 ZNF541Q9H0D2 1346 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 RNF113AO15541 343 aaKnown RBP16.23■□□□□ 0.19
PRPF39-202ENST00000424478 LDHBP07195 334 aaKnown RBP16.23■□□□□ 0.19
PRPF39-202ENST00000424478 CYP7A1P22680 504 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 DYNLL1P63167 89 aaKnown RBP16.23■□□□□ 0.19
PRPF39-202ENST00000424478 DACT2Q5SW24 774 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 VPS53Q5VIR6 699 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 SBF1O95248 1867 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 USP17L3A6NCW0 530 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 USP17L4A6NCW7 530 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 ADD2P35612 726 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 USP17L1Q7RTZ2 530 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 DZIP1Q86YF9 867 aaKnown RBP16.23■□□□□ 0.19
PRPF39-202ENST00000424478 ZNRF3Q9ULT6 936 aa16.23■□□□□ 0.19
PRPF39-202ENST00000424478 DOCK2Q92608 1830 aa16.22■□□□□ 0.19
PRPF39-202ENST00000424478 SEMA3EO15041 775 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms