RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RGS12O14924 1447 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 TRIM66O15016 1216 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 SPTY2D1Q68D10 685 aaPredicted RBP11.36□□□□□ -0.59
USP54-205ENST00000424265 TMCO3Q6UWJ1 677 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 ZGPATQ8N5A5 531 aaKnown RBP11.36□□□□□ -0.59
USP54-205ENST00000424265 ZBTB1Q9Y2K1 713 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 PSMA5P28066 241 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 SMC5Q8IY18 1101 aa11.36□□□□□ -0.59
USP54-205ENST00000424265 C16orf45Q96MC5 204 aaPredicted RBP11.36□□□□□ -0.59
USP54-205ENST00000424265 KIF2AO00139 706 aaPredicted RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 SPC24Q8NBT2 197 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 FBXW7Q969H0 707 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 EYA3Q99504 573 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 ANO2Q9NQ90 1003 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 V9GYY5 206 aaPredicted RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 PXDNLA1KZ92 1463 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 NRDCO43847 1150 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 PDE6BP35913 854 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 PIP4K2AP48426 406 aaPredicted RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 NCBP1Q09161 790 aaKnown RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 JAKMIP3Q5VZ66 844 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 RBM27Q9P2N5 1060 aaKnown RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 AOX1Q06278 1338 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 CYP19A1P11511 503 aaPredicted RBP11.35□□□□□ -0.59
USP54-205ENST00000424265 DDX11Q96FC9 970 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 FAM107BQ9H098 131 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 IL1RAPL2Q9NP60 686 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 CNTNAP4Q9C0A0 1308 aa11.35□□□□□ -0.59
USP54-205ENST00000424265 USP25Q9UHP3 1055 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 ADCY5O95622 1261 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 MICALL1Q8N3F8 863 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 EVI5LQ96CN4 794 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 TMCO5BA8MYB1 307 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 MAP3K12Q12852 859 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 BICC1Q9H694 974 aaKnown RBP11.34□□□□□ -0.59
USP54-205ENST00000424265 LTN1O94822 1766 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 K7ELQ4 463 aaPredicted RBP11.34□□□□□ -0.59
USP54-205ENST00000424265 MAGEA9P43362 315 aa11.34□□□□□ -0.59
USP54-205ENST00000424265 PPP1R1BQ9UD71 204 aaPredicted RBP11.34□□□□□ -0.59
USP54-205ENST00000424265 EYA2O00167 538 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 LDHCP07864 332 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 ZFYP08048 801 aaPredicted RBP11.33□□□□□ -0.59
USP54-205ENST00000424265 ALDH1B1P30837 517 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 BMP2KLQ5H9B9 411 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 CPLX2Q6PUV4 134 aaKnown RBP11.33□□□□□ -0.59
USP54-205ENST00000424265 SYNE3Q6ZMZ3 975 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 GOLGA5Q8TBA6 731 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 NARFQ9UHQ1 456 aa11.33□□□□□ -0.59
USP54-205ENST00000424265 UVSSAQ2YD98 709 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 IRX1P78414 480 aaPredicted RBP11.33□□□□□ -0.6
USP54-205ENST00000424265 TRIM28Q13263 835 aaKnown RBP11.33□□□□□ -0.6
USP54-205ENST00000424265 TTLL7Q6ZT98 887 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 PCDHB15Q9Y5E8 787 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 MROH5Q6ZUA9 1318 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 CTAGE5O15320 804 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 CCDC85AQ96PX6 553 aaPredicted RBP11.33□□□□□ -0.6
USP54-205ENST00000424265 COL15A1P39059 1388 aa11.33□□□□□ -0.6
USP54-205ENST00000424265 PARP4Q9UKK3 1724 aaKnown RBP11.33□□□□□ -0.6
USP54-205ENST00000424265 SHPRHQ149N8 1683 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 NHSL1Q5SYE7 1610 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 SUPT20HQ8NEM7 779 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 MUM1L1Q5H9M0 696 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 MMS22LQ6ZRQ5 1243 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 ZNF804AQ7Z570 1209 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 KCNA4P22459 653 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 NAP1L1P55209 391 aaKnown RBP11.32□□□□□ -0.6
USP54-205ENST00000424265 MCM2P49736 904 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 CTSWP56202 376 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 RALYLQ86SE5 291 aaKnown RBP11.32□□□□□ -0.6
USP54-205ENST00000424265 SLC24A3Q9HC58 644 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 LRP2BPQ9P2M1 347 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 ALS2Q96Q42 1657 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 GSTO1P78417 241 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 FOXD4L5Q5VV16 416 aaPredicted RBP11.32□□□□□ -0.6
USP54-205ENST00000424265 SSH3Q8TE77 659 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 FOXD4L4Q8WXT5 416 aaPredicted RBP11.32□□□□□ -0.6
USP54-205ENST00000424265 USP44Q9H0E7 712 aa11.32□□□□□ -0.6
USP54-205ENST00000424265 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 ERICH2A1L162 156 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 ZRSR2Q15696 482 aaKnown RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 ITFG2Q969R8 447 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 CCDC34Q96HJ3 373 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 KRT32Q14532 448 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 JMYQ8N9B5 988 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 FAM89AQ96GI7 184 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 SPATS2LQ9NUQ6 558 aaKnown RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 PHRF1Q9P1Y6 1649 aaKnown RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 TRPM3Q9HCF6 1732 aaPredicted RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 CDHR2Q9BYE9 1310 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 H0YIN7 160 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 FKBP4Q02790 459 aaKnown RBP eCLIP11.31□□□□□ -0.6
USP54-205ENST00000424265 TXNRD1Q16881 649 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 SOGA3Q5TF21 947 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 SUCLG2Q96I99 432 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 ACBD3Q9H3P7 528 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 SLIT2O94813 1529 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 ERCC3P19447 782 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 ITGA6P23229 1130 aa11.31□□□□□ -0.6
USP54-205ENST00000424265 ERCC4Q92889 916 aaPredicted RBP11.31□□□□□ -0.6
USP54-205ENST00000424265 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms