RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 CERS5Q8N5B7 392 aa21.49■■□□□ 1.03
CHCHD3-202ENST00000423635 TSPYL6Q8N831 410 aa21.49■■□□□ 1.03
CHCHD3-202ENST00000423635 SPEF2Q9C093 1822 aa21.49■■□□□ 1.03
CHCHD3-202ENST00000423635 BRCA2P51587 3418 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 USP2O75604 605 aaPredicted RBP21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 CHRNDQ07001 517 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 CRHR2Q13324 411 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 UBE3BQ7Z3V4 1068 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 CD99L2Q8TCZ2 262 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 EFCC1Q9HA90 598 aa21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 KIAA0100Q14667 2235 aaKnown RBP21.48■■□□□ 1.03
CHCHD3-202ENST00000423635 RBBP6Q7Z6E9 1792 aaKnown RBP21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 EN2P19622 333 aaPredicted RBP21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 CASP7P55210 303 aa21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 FKBP1AP62942 108 aaKnown RBP21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 SP3Q02447 781 aa21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 PTPN18Q99952 460 aa21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 PCDHAC2Q9Y5I4 1007 aa21.47■■□□□ 1.03
CHCHD3-202ENST00000423635 SPDYE2BA6NHP3 402 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 MYO1BO43795 1136 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 SPDYE6P0CI01 402 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 GJA5P36382 358 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 KCNJ4P48050 445 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 IREB2P48200 963 aaKnown RBP21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 GCKRQ14397 625 aa21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 NBPF12Q5TAG4 269 aaPredicted RBP21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 PRMT6Q96LA8 375 aaPredicted RBP21.46■■□□□ 1.03
CHCHD3-202ENST00000423635 IL1R1P14778 569 aa21.45■■□□□ 1.02
CHCHD3-202ENST00000423635 FXR1P51114 621 aaKnown RBP eCLIP21.45■■□□□ 1.02
CHCHD3-202ENST00000423635 CFAP100Q494V2 611 aa21.45■■□□□ 1.02
CHCHD3-202ENST00000423635 ANKRD13AQ8IZ07 590 aa21.45■■□□□ 1.02
CHCHD3-202ENST00000423635 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.45■■□□□ 1.02
CHCHD3-202ENST00000423635 CAP1Q01518 475 aa21.44■■□□□ 1.02
CHCHD3-202ENST00000423635 DDX10Q13206 875 aaKnown RBP21.44■■□□□ 1.02
CHCHD3-202ENST00000423635 STK31Q9BXU1 1019 aa21.44■■□□□ 1.02
CHCHD3-202ENST00000423635 CLRN2A0PK11 232 aa21.43■■□□□ 1.02
CHCHD3-202ENST00000423635 G2E3Q7L622 706 aa21.43■■□□□ 1.02
CHCHD3-202ENST00000423635 SNAP23O00161 211 aa21.42■■□□□ 1.02
CHCHD3-202ENST00000423635 ZNF333Q96JL9 665 aa21.42■■□□□ 1.02
CHCHD3-202ENST00000423635 MS4A4AQ96JQ5 239 aa21.42■■□□□ 1.02
CHCHD3-202ENST00000423635 TMEM106CQ9BVX2 250 aa21.42■■□□□ 1.02
CHCHD3-202ENST00000423635 ECM29Q5VYK3 1845 aa21.42■■□□□ 1.02
CHCHD3-202ENST00000423635 ANKRD18BA2A2Z9 1011 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 F8W031 263 aaPredicted RBP21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 TAF5LO75529 589 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 SLC4A2P04920 1241 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 RASA3Q14644 834 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 VEZTQ9HBM0 779 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 AOX1Q06278 1338 aa21.41■■□□□ 1.02
CHCHD3-202ENST00000423635 ARHGEF6Q15052 776 aa21.4■■□□□ 1.02
CHCHD3-202ENST00000423635 ZNF804AQ7Z570 1209 aa21.4■■□□□ 1.02
CHCHD3-202ENST00000423635 NBPF11Q86T75 865 aa21.39■■□□□ 1.01
CHCHD3-202ENST00000423635 OPTNQ96CV9 577 aa21.39■■□□□ 1.01
CHCHD3-202ENST00000423635 MYH16Q9H6N6 1097 aa21.39■■□□□ 1.01
CHCHD3-202ENST00000423635 HELBQ8NG08 1087 aaPredicted RBP21.38■■□□□ 1.01
CHCHD3-202ENST00000423635 LINS1Q8NG48 757 aa21.38■■□□□ 1.01
CHCHD3-202ENST00000423635 TNFAIP1Q13829 316 aa21.37■■□□□ 1.01
CHCHD3-202ENST00000423635 TWISTNBQ3B726 338 aaPredicted RBP21.37■■□□□ 1.01
CHCHD3-202ENST00000423635 TSR2Q969E8 191 aaKnown RBP21.37■■□□□ 1.01
CHCHD3-202ENST00000423635 ELP3Q9H9T3 547 aa21.37■■□□□ 1.01
CHCHD3-202ENST00000423635 COLQQ9Y215 455 aaPredicted RBP21.37■■□□□ 1.01
CHCHD3-202ENST00000423635 RBM5P52756 815 aaKnown RBP eCLIP21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 FLIIQ13045 1269 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 IFIT5Q13325 482 aaKnown RBP21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 SPDYE2Q495Y8 402 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 DNAAF4Q8WXU2 420 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 BRI3BPQ8WY22 251 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 TEPSINQ96N21 525 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 PRKRIP1Q9H875 184 aaPredicted RBP21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 ZFYVE28Q9HCC9 887 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 ZNF70Q9UC06 446 aaPredicted RBP21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 FAM205AQ6ZU69 1335 aa21.36■■□□□ 1.01
CHCHD3-202ENST00000423635 GTF2A2P52657 109 aa21.35■■□□□ 1.01
CHCHD3-202ENST00000423635 FOXO4P98177 505 aa21.35■■□□□ 1.01
CHCHD3-202ENST00000423635 SLC9C1Q4G0N8 1177 aa21.35■■□□□ 1.01
CHCHD3-202ENST00000423635 SERPINA10Q9UK55 444 aa21.35■■□□□ 1.01
CHCHD3-202ENST00000423635 PTCH2Q9Y6C5 1203 aa21.35■■□□□ 1.01
CHCHD3-202ENST00000423635 MAP3K9P80192 1104 aa21.34■■□□□ 1.01
CHCHD3-202ENST00000423635 TAF1CQ15572 869 aaPredicted RBP21.34■■□□□ 1.01
CHCHD3-202ENST00000423635 JAG2Q9Y219 1238 aa21.34■■□□□ 1.01
CHCHD3-202ENST00000423635 TDRD3Q9H7E2 651 aaKnown RBP21.33■■□□□ 1.01
CHCHD3-202ENST00000423635 CCL15-CCL14A0A0B4J2E2 113 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 FKBP5Q13451 457 aaPredicted RBP21.32■■□□□ 1
CHCHD3-202ENST00000423635 CCL15Q16663 113 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 CCDC27Q2M243 656 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 SLC4A8Q2Y0W8 1093 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 FAM43AQ8N2R8 423 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 TDRD7Q8NHU6 1098 aaKnown RBP21.32■■□□□ 1
CHCHD3-202ENST00000423635 CNKSR2Q8WXI2 1034 aa21.32■■□□□ 1
CHCHD3-202ENST00000423635 VGLL4Q14135 290 aa21.31■■□□□ 1
CHCHD3-202ENST00000423635 DZIP1LQ8IYY4 767 aaKnown RBP21.31■■□□□ 1
CHCHD3-202ENST00000423635 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.31■■□□□ 12e-18■□□□□ 9
CHCHD3-202ENST00000423635 OTUD5Q96G74 571 aa21.31■■□□□ 1
CHCHD3-202ENST00000423635 TTF2Q9UNY4 1162 aaKnown RBP21.31■■□□□ 1
CHCHD3-202ENST00000423635 OTOFQ9HC10 1997 aa21.31■■□□□ 1
CHCHD3-202ENST00000423635 MFSD14BQ5SR56 506 aa21.3■■□□□ 1
CHCHD3-202ENST00000423635 LDHAL6AQ6ZMR3 332 aa21.3■■□□□ 1
CHCHD3-202ENST00000423635 CDAN1Q8IWY9 1227 aa21.3■■□□□ 1
CHCHD3-202ENST00000423635 ZCCHC17Q9NP64 241 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms