RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PIM2Q9P1W9 311 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 POLLQ9UGP5 575 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 RBM19Q9Y4C8 960 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 DOCK2Q92608 1830 aa20.66■□□□□ 0.9
CCDC28B-202ENST00000421922 KIAA1551Q9HCM1 1747 aa20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 CYP2E1P05181 493 aaPredicted RBP20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 MAP3K12Q12852 859 aa20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 SOGA3Q5TF21 947 aa20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 SUPT20HQ8NEM7 779 aa20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 SGIP1Q9BQI5 828 aa20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 FHDC1Q9C0D6 1143 aaPredicted RBP20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 ZC3H12CQ9C0D7 883 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-202ENST00000421922 RNF113AO15541 343 aaKnown RBP20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 CHAF1AQ13111 956 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 CCDC93Q567U6 631 aa20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 OLFM4Q6UX06 510 aa20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 C22orf23Q9BZE7 217 aa20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 LRP2BPQ9P2M1 347 aa20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 PDS5AQ29RF7 1337 aaKnown RBP20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 DUOX1Q9NRD9 1551 aa20.64■□□□□ 0.89
CCDC28B-202ENST00000421922 RIMBP2O15034 1052 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 SGSM2O43147 1006 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 C21orf2O43822 256 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 MCCP23508 829 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 ANP32AP39687 249 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 TXNRD3Q86VQ6 643 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 MYO5AQ9Y4I1 1855 aaKnown RBP20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 IRS2Q9Y4H2 1338 aa20.63■□□□□ 0.89
CCDC28B-202ENST00000421922 DALRD3Q5D0E6 543 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-202ENST00000421922 ZGPATQ8N5A5 531 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-202ENST00000421922 FAM227BQ96M60 508 aa20.62■□□□□ 0.89
CCDC28B-202ENST00000421922 PIH1D3Q9NQM4 214 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-202ENST00000421922 ABCF2Q9UG63 623 aa20.62■□□□□ 0.89
CCDC28B-202ENST00000421922 A0A0D9SFI3 127 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 RTKN2Q8IZC4 609 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 HELLSQ9NRZ9 838 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 BRCA1P38398 1863 aaKnown RBP20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 CCDC88AQ3V6T2 1871 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 COL1A1P02452 1464 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 MCMDC2Q4G0Z9 681 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 SLC9C2Q5TAH2 1124 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 SPTY2D1Q68D10 685 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 WDR66Q8TBY9 1149 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 TBC1D32Q96NH3 1257 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 COA1Q9GZY4 146 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 CD209Q9NNX6 404 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 RAI14Q9P0K7 980 aa20.61■□□□□ 0.89
CCDC28B-202ENST00000421922 MAST2Q6P0Q8 1798 aa20.6■□□□□ 0.89
CCDC28B-202ENST00000421922 ZBTB22O15209 634 aa20.6■□□□□ 0.89
CCDC28B-202ENST00000421922 KCNA3P22001 575 aa20.6■□□□□ 0.89
CCDC28B-202ENST00000421922 TDRD7Q8NHU6 1098 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-202ENST00000421922 C7orf43Q8WVR3 580 aa20.6■□□□□ 0.89
CCDC28B-202ENST00000421922 ZMYM1Q5SVZ6 1142 aa20.59■□□□□ 0.89
CCDC28B-202ENST00000421922 ERICH6Q7L0X2 663 aa20.59■□□□□ 0.89
CCDC28B-202ENST00000421922 APPBP2Q92624 585 aa20.59■□□□□ 0.89
CCDC28B-202ENST00000421922 EPB41L2O43491 1005 aaKnown RBP20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 IL1R1P14778 569 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 PDE6AP16499 860 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 ADD2P35612 726 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 C1QTNF8P60827 252 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 FBXW7Q969H0 707 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 USP26Q9BXU7 913 aa20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 RTFDC1Q9BY42 306 aaPredicted RBP20.58■□□□□ 0.88
CCDC28B-202ENST00000421922 UBE3CQ15386 1083 aa20.57■□□□□ 0.88
CCDC28B-202ENST00000421922 MAGEB6Q8N7X4 407 aa20.57■□□□□ 0.88
CCDC28B-202ENST00000421922 WWC3Q9ULE0 1092 aa20.57■□□□□ 0.88
CCDC28B-202ENST00000421922 CCDC171Q6TFL3 1326 aa20.57■□□□□ 0.88
CCDC28B-202ENST00000421922 TBC1D22AQ8WUA7 517 aa20.56■□□□□ 0.88
CCDC28B-202ENST00000421922 JAG2Q9Y219 1238 aa20.56■□□□□ 0.88
CCDC28B-202ENST00000421922 ZNF532Q9HCE3 1301 aa20.56■□□□□ 0.88
CCDC28B-202ENST00000421922 PPIP5K2O43314 1243 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 DOK7Q18PE1 504 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 DZIP1Q86YF9 867 aaKnown RBP20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 PSMD1Q99460 953 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 IL25Q9H293 177 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 BCS1LQ9Y276 419 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 SALL1Q9NSC2 1324 aa20.55■□□□□ 0.88
CCDC28B-202ENST00000421922 IGSF3O75054 1194 aa20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 LDHBP07195 334 aaKnown RBP20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 RBM25P49756 843 aaKnown RBP20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 NAA16Q6N069 864 aaPredicted RBP20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 ZNF589Q86UQ0 364 aaPredicted RBP20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 SEC62Q99442 399 aaKnown RBP20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 MAST3O60307 1309 aa20.54■□□□□ 0.88
CCDC28B-202ENST00000421922 CHGBP05060 677 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 CYP7A1P22680 504 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 KIAA2012Q0VF49 1180 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 AOC3Q16853 763 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 TMED8Q6PL24 325 aaPredicted RBP20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 CCDC129Q6ZRS4 1044 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 AIDAQ96BJ3 306 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 LSG1Q9H089 658 aaKnown RBP20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 ARFGEF1Q9Y6D6 1849 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 SNED1Q8TER0 1413 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 M0R2C6 588 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 GSTO1P78417 241 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 SLFNL1Q499Z3 407 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 PODNQ7Z5L7 613 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 OSBP2Q969R2 916 aa20.53■□□□□ 0.88
CCDC28B-202ENST00000421922 DBNDD1Q9H9R9 158 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms