RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 TMEM87AQ8NBN3 555 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 NSUN7Q8NE18 718 aaKnown RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 CDHR2Q9BYE9 1310 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 WTIPA6NIX2 430 aaPredicted RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 GOLGA8BA8MQT2 603 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 PTF1AQ7RTS3 328 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 ZNF34Q8IZ26 560 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 FBXW7Q969H0 707 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 ERVV-1B6SEH8 477 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 PFKFB2O60825 505 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 IGHMBP2P38935 993 aaKnown RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 EXOSC10Q01780 885 aaKnown RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 MIGA1Q8NAN2 632 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 LEO1Q8WVC0 666 aaPredicted RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 ZNF830Q96NB3 372 aaPredicted RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 LAMB4A4D0S4 1761 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 CTDNEP1O95476 244 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 POLR3DP05423 398 aaPredicted RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 SLC5A1P13866 664 aa12.87□□□□□ -0.35
DDX56-203ENST00000421223 PUM3Q15397 648 aaKnown RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 SCAND2PQ9GZW5 306 aaPredicted RBP12.87□□□□□ -0.35
DDX56-203ENST00000421223 FOXP2O15409 715 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 PDE6AP16499 860 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 MCM5P33992 734 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 ZSCAN30Q86W11 494 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 NCOA7Q8NI08 942 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 NUP62CLQ9H1M0 184 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 ALDH8A1Q9H2A2 487 aaPredicted RBP12.86□□□□□ -0.35
DDX56-203ENST00000421223 ARMT1Q9H993 441 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 TOGARAM1Q9Y4F4 1720 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 JCADQ9P266 1359 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 B4E1Z4 1266 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 NFXL1Q6ZNB6 911 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 LPIN2Q92539 896 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 TNMDQ9H2S6 317 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 LRP2BPQ9P2M1 347 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 RFX7Q2KHR2 1363 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 ADD2P35612 726 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 RASGRF1Q13972 1273 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 CCDC152Q4G0S7 254 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 ZSCAN25Q6NSZ9 544 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 SPATA5Q8NB90 893 aa12.86□□□□□ -0.35
DDX56-203ENST00000421223 MBD4O95243 580 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 CCDC82Q8N4S0 544 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.85□□□□□ -0.35
DDX56-203ENST00000421223 MYL10Q9BUA6 226 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 RIC1Q4ADV7 1423 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 CAMTA2O94983 1202 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 CTDSPL2Q05D32 466 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 TTF1Q15361 905 aaPredicted RBP12.85□□□□□ -0.35
DDX56-203ENST00000421223 MICU3Q86XE3 530 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 NKX2-3Q8TAU0 364 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 KIF3AQ9Y496 699 aa12.85□□□□□ -0.35
DDX56-203ENST00000421223 PRKAB2O43741 272 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 NR1I2O75469 434 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 ME1P48163 572 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 RESTQ13127 1097 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 VPS37DQ86XT2 251 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 VGLL2Q8N8G2 317 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 ZKSCAN3Q9BRR0 538 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 ORC3Q9UBD5 711 aaPredicted RBP12.84□□□□□ -0.35
DDX56-203ENST00000421223 DISP2A7MBM2 1401 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 UBAP1LF5GYI3 381 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 LETM1O95202 739 aaPredicted RBP12.84□□□□□ -0.35
DDX56-203ENST00000421223 ADCY5O95622 1261 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 HMGN5P82970 282 aaKnown RBP12.84□□□□□ -0.35
DDX56-203ENST00000421223 MAP3K12Q12852 859 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 MAP3K11Q16584 847 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 SPC24Q8NBT2 197 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 PGBD1Q96JS3 809 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 CDCA7Q9BWT1 371 aaPredicted RBP12.84□□□□□ -0.35
DDX56-203ENST00000421223 NAPBQ9H115 298 aa12.84□□□□□ -0.35
DDX56-203ENST00000421223 UQCRFS1P1P0C7P4 283 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 ADD1P35611 737 aaKnown RBP12.83□□□□□ -0.35
DDX56-203ENST00000421223 GYG1P46976 350 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 ERFEQ4G0M1 354 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 GLIPR1L2Q4G1C9 344 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 TBC1D10CQ8IV04 446 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 ERCC4Q92889 916 aaPredicted RBP12.83□□□□□ -0.35
DDX56-203ENST00000421223 JAG2Q9Y219 1238 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 UBR2Q8IWV8 1755 aa12.83□□□□□ -0.35
DDX56-203ENST00000421223 TJP1Q07157 1748 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 A0A087WWV3 80 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 CCDC192P0DO97 292 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 CHRNDQ07001 517 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 SF3A1Q15459 793 aaKnown RBP12.83□□□□□ -0.36
DDX56-203ENST00000421223 USP28Q96RU2 1077 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 SENP2Q9HC62 589 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 RAI14Q9P0K7 980 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 SHANK3Q9BYB0 1731 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 MROH5Q6ZUA9 1318 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 TDO2P48775 406 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 ANTXR2P58335 489 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 C3orf67Q6ZVT6 689 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 C8orf76Q96K31 380 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 AIFM3Q96NN9 605 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 ABCA3Q99758 1704 aa12.83□□□□□ -0.36
DDX56-203ENST00000421223 SRP68Q9UHB9 627 aaKnown RBP12.83□□□□□ -0.36
DDX56-203ENST00000421223 CFAP45Q9UL16 551 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms