RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NAA16Q6N069 864 aaPredicted RBP9.91□□□□□ -0.82
USP54-203ENST00000418501 GGA1Q9UJY5 639 aa9.91□□□□□ -0.82
USP54-203ENST00000418501 ADD2P35612 726 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 HELBQ8NG08 1087 aaPredicted RBP9.9□□□□□ -0.82
USP54-203ENST00000418501 LLPHQ9BRT6 129 aaKnown RBP9.9□□□□□ -0.82
USP54-203ENST00000418501 SRP68Q9UHB9 627 aaKnown RBP9.9□□□□□ -0.82
USP54-203ENST00000418501 THSD7AQ9UPZ6 1657 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 NHSQ6T4R5 1651 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 CYP7A1P22680 504 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 ADORA1P30542 326 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 NFXL1Q6ZNB6 911 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 WASF1Q92558 559 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 SEC31BQ9NQW1 1179 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 GLI3P10071 1580 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 SPEF2Q9C093 1822 aa9.9□□□□□ -0.82
USP54-203ENST00000418501 MAGEB6P1A0A0J9YX57 407 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 CCDC196A0A1B0GTZ2 297 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 CUL4AQ13619 759 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 CRAMP1Q96RY5 1269 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 ZNF804BA4D1E1 1349 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 WDR19Q8NEZ3 1342 aa9.9□□□□□ -0.83
USP54-203ENST00000418501 GPAA1O43292 621 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 AK2P54819 239 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 TRIM29Q14134 588 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 PDE6AP16499 860 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 NFIXQ14938 502 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 MAGEB6Q8N7X4 407 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 KIF2CQ99661 725 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 MAST3O60307 1309 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 PATL2C9JE40 543 aaKnown RBP9.89□□□□□ -0.83
USP54-203ENST00000418501 FGFR2P21802 821 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 AKAP17AQ02040 695 aaKnown RBP9.89□□□□□ -0.83
USP54-203ENST00000418501 PTH1RQ03431 593 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 CC2D2BQ6DHV5 1058 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 SUPT20HQ8NEM7 779 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 MINPP1Q9UNW1 487 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 TJP1Q07157 1748 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 HSPD1P10809 573 aaKnown RBP9.89□□□□□ -0.83
USP54-203ENST00000418501 PHKA1P46020 1223 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 ALX1Q15699 326 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 TMEM87BQ96K49 555 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 MTA3Q9BTC8 594 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 RIC1Q4ADV7 1423 aa9.89□□□□□ -0.83
USP54-203ENST00000418501 ZNF532Q9HCE3 1301 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 NPR1P16066 1061 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 GNL2Q13823 731 aaKnown RBP9.88□□□□□ -0.83
USP54-203ENST00000418501 MFSD6Q6ZSS7 791 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 CCDC69A6NI79 296 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 XBP1P17861 261 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 PPP4R3BQ5MIZ7 849 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 FAM182BQ5T319 152 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 LARP1BQ659C4 914 aaKnown RBP9.88□□□□□ -0.83
USP54-203ENST00000418501 ZMYM6O95789 1325 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 LETM1O95202 739 aaPredicted RBP9.88□□□□□ -0.83
USP54-203ENST00000418501 CHAF1AQ13111 956 aaPredicted RBP9.88□□□□□ -0.83
USP54-203ENST00000418501 PPP2R5BQ15173 497 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 SYNE4Q8N205 404 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 UBAC1Q9BSL1 405 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 BRIP1Q9BX63 1249 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 SLC4A4Q9Y6R1 1079 aa9.88□□□□□ -0.83
USP54-203ENST00000418501 LDHBP07195 334 aaKnown RBP9.87□□□□□ -0.83
USP54-203ENST00000418501 MCAMP43121 646 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 GSE1Q14687 1217 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 GIMAP6Q6P9H5 292 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 DDX49Q9Y6V7 483 aaKnown RBP9.87□□□□□ -0.83
USP54-203ENST00000418501 C6orf229H3BNL8 230 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 TNPO1Q92973 898 aaKnown RBP9.87□□□□□ -0.83
USP54-203ENST00000418501 ZNF396Q96N95 335 aaPredicted RBP9.87□□□□□ -0.83
USP54-203ENST00000418501 ANTXR1Q9H6X2 564 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 ANKRD36CQ5JPF3 1778 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 H0YIN7 160 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 PDE4BQ07343 736 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 VGLL2Q8N8G2 317 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 FBXO41Q8TF61 875 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 ESR2Q92731 530 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 CNKSR1Q969H4 720 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 PALD1Q9ULE6 856 aa9.87□□□□□ -0.83
USP54-203ENST00000418501 ZBTB22O15209 634 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 IQCA1Q86XH1 822 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 CCDC83Q8IWF9 413 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 ZC3H12CQ9C0D7 883 aaKnown RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 MBD4O95243 580 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 SAFBQ15424 915 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP54-203ENST00000418501 TRIM22Q8IYM9 498 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 EDC3Q96F86 508 aaKnown RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 NSFL1CQ9UNZ2 370 aaKnown RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 PNPLA7Q6ZV29 1317 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 VPS37CA5D8V6 355 aaPredicted RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 TRAK2O60296 914 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 UFL1O94874 794 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 BCAMP50895 628 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 Q6ZUG5 572 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 ZNF274Q96GC6 653 aaPredicted RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 ZSCAN16Q9H4T2 348 aaPredicted RBP9.86□□□□□ -0.83
USP54-203ENST00000418501 STX6O43752 255 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 RASGRF1Q13972 1273 aa9.86□□□□□ -0.83
USP54-203ENST00000418501 USP5P45974 858 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 MCTP1Q6DN14 999 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 PRR5LQ6MZQ0 368 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 CCDC34Q96HJ3 373 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms