RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TTC41PQ6P2S7 1318 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 SNED1Q8TER0 1413 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 AK9Q5TCS8 1911 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 WTIPA6NIX2 430 aaPredicted RBP10.32□□□□□ -0.76
TRIM48-201ENST00000417545 SEMA3EO15041 775 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 PODNQ7Z5L7 613 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 C16orf71Q8IYS4 520 aaPredicted RBP10.32□□□□□ -0.76
TRIM48-201ENST00000417545 FAM84BQ96KN1 310 aaPredicted RBP10.32□□□□□ -0.76
TRIM48-201ENST00000417545 CD209Q9NNX6 404 aa10.32□□□□□ -0.76
TRIM48-201ENST00000417545 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.32□□□□□ -0.76
TRIM48-201ENST00000417545 TRIM6-TRIM34B2RNG4 842 aa10.31□□□□□ -0.76
TRIM48-201ENST00000417545 GLRX3O76003 335 aaKnown RBP10.31□□□□□ -0.76
TRIM48-201ENST00000417545 TNIP1Q15025 636 aa10.31□□□□□ -0.76
TRIM48-201ENST00000417545 C9orf131Q5VYM1 1079 aa10.31□□□□□ -0.76
TRIM48-201ENST00000417545 TXNRD3Q86VQ6 643 aa10.31□□□□□ -0.76
TRIM48-201ENST00000417545 ZNRF3Q9ULT6 936 aa10.31□□□□□ -0.76
TRIM48-201ENST00000417545 USP17L3A6NCW0 530 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 USP17L4A6NCW7 530 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 ARID4AP29374 1257 aaPredicted RBP10.3□□□□□ -0.76
TRIM48-201ENST00000417545 GTF2IP78347 998 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 TSHZ3Q63HK5 1081 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 USP17L1Q7RTZ2 530 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 FBXO33Q7Z6M2 555 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 ZGPATQ8N5A5 531 aaKnown RBP10.3□□□□□ -0.76
TRIM48-201ENST00000417545 SPATA5Q8NB90 893 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 WDR66Q8TBY9 1149 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 OTUD7AQ8TE49 926 aaPredicted RBP10.3□□□□□ -0.76
TRIM48-201ENST00000417545 TBC1D22AQ8WUA7 517 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 BOLA2Q9H3K6 86 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 SNRKQ9NRH2 765 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 ABCF2Q9UG63 623 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 JAG2Q9Y219 1238 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 GJA3Q9Y6H8 435 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 AOX1Q06278 1338 aa10.3□□□□□ -0.76
TRIM48-201ENST00000417545 RAD17O75943 681 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 IL1R1P14778 569 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 ATP5JP18859 108 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 PDE1AP54750 535 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 RASGRF1Q13972 1273 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 TTF1Q15361 905 aaPredicted RBP10.29□□□□□ -0.76
TRIM48-201ENST00000417545 SPTY2D1Q68D10 685 aaPredicted RBP10.29□□□□□ -0.76
TRIM48-201ENST00000417545 TTLL5Q6EMB2 1281 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 CIAPIN1Q6FI81 312 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 TDRD7Q8NHU6 1098 aaKnown RBP10.29□□□□□ -0.76
TRIM48-201ENST00000417545 RILPL2Q969X0 211 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 LRP2BPQ9P2M1 347 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 PSME4Q14997 1843 aa10.29□□□□□ -0.76
TRIM48-201ENST00000417545 GOLIM4O00461 696 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 MAP4K4O95819 1239 aaPredicted RBP10.28□□□□□ -0.76
TRIM48-201ENST00000417545 MCAMP43121 646 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 LRRFIP1Q32MZ4 808 aaKnown RBP10.28□□□□□ -0.76
TRIM48-201ENST00000417545 MFSD14BQ5SR56 506 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 DPY19L2Q6NUT2 758 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 DZIP1Q86YF9 867 aaKnown RBP10.28□□□□□ -0.76
TRIM48-201ENST00000417545 PLEKHM2Q8IWE5 1019 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 CNTROBQ8N137 903 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.28□□□□□ -0.76
TRIM48-201ENST00000417545 ZNF512BQ96KM6 892 aaPredicted RBP10.28□□□□□ -0.76
TRIM48-201ENST00000417545 PAG1Q9NWQ8 432 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 HMG20BQ9P0W2 317 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 MYO3BQ8WXR4 1341 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 MAST2Q6P0Q8 1798 aa10.28□□□□□ -0.76
TRIM48-201ENST00000417545 LDHBP07195 334 aaKnown RBP10.27□□□□□ -0.77
TRIM48-201ENST00000417545 PDE4AP27815 886 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 ZAP70P43403 619 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 STRIP1Q5VSL9 837 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 ERICH6Q7L0X2 663 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 NOL10Q9BSC4 688 aaKnown RBP10.27□□□□□ -0.77
TRIM48-201ENST00000417545 FSD1Q9BTV5 496 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.27□□□□□ -0.77
TRIM48-201ENST00000417545 RAI14Q9P0K7 980 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 STAP2Q9UGK3 403 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 HDAC9Q9UKV0 1011 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 MAST3O60307 1309 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 IRS2Q9Y4H2 1338 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 MYH7P12883 1935 aa10.27□□□□□ -0.77
TRIM48-201ENST00000417545 SCN9AQ15858 1988 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 AKAP11Q9UKA4 1901 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 COL4A5P29400 1685 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 PDS5AQ29RF7 1337 aaKnown RBP10.26□□□□□ -0.77
TRIM48-201ENST00000417545 ZC3H4Q9UPT8 1303 aaKnown RBP10.26□□□□□ -0.77
TRIM48-201ENST00000417545 F8W031 263 aaPredicted RBP10.26□□□□□ -0.77
TRIM48-201ENST00000417545 PSMD14O00487 310 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 IDH1O75874 414 aaKnown RBP10.26□□□□□ -0.77
TRIM48-201ENST00000417545 LMOD1P29536 600 aaPredicted RBP10.26□□□□□ -0.77
TRIM48-201ENST00000417545 MAP3K12Q12852 859 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 SCARF1Q14162 830 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 TTC22Q5TAA0 569 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 ZSCAN25Q6NSZ9 544 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 PI16Q6UXB8 463 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 OGFOD1Q8N543 542 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 HAUS7Q99871 368 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 NDUFB9Q9Y6M9 179 aa10.26□□□□□ -0.77
TRIM48-201ENST00000417545 FAM205AQ6ZU69 1335 aa10.25□□□□□ -0.77
TRIM48-201ENST00000417545 SALL3Q9BXA9 1300 aa10.25□□□□□ -0.77
TRIM48-201ENST00000417545 ZNF541Q9H0D2 1346 aa10.25□□□□□ -0.77
TRIM48-201ENST00000417545 YDJCA8MPS7 323 aa10.25□□□□□ -0.77
TRIM48-201ENST00000417545 RBM5P52756 815 aaKnown RBP eCLIP10.25□□□□□ -0.77
TRIM48-201ENST00000417545 GSTO1P78417 241 aa10.25□□□□□ -0.77
TRIM48-201ENST00000417545 CXCL9Q07325 125 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms