RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 CHMP4BQ9H444 224 aaKnown RBP25.74■■□□□ 1.71
VSX1-204ENST00000409958 BCAMP50895 628 aa25.73■■□□□ 1.71
VSX1-204ENST00000409958 G3BP1Q13283 466 aaKnown RBP eCLIP25.73■■□□□ 1.71
VSX1-204ENST00000409958 KIAA0825Q8IV33 1275 aa25.73■■□□□ 1.71
VSX1-204ENST00000409958 CERS5Q8N5B7 392 aa25.73■■□□□ 1.71
VSX1-204ENST00000409958 HDAC9Q9UKV0 1011 aa25.73■■□□□ 1.71
VSX1-204ENST00000409958 CEP85Q6P2H3 762 aa25.72■■□□□ 1.71
VSX1-204ENST00000409958 JAG2Q9Y219 1238 aa25.72■■□□□ 1.71
VSX1-204ENST00000409958 TFCP2Q12800 502 aa25.71■■□□□ 1.71
VSX1-204ENST00000409958 C20orf194Q5TEA3 1177 aa25.71■■□□□ 1.71
VSX1-204ENST00000409958 ZBTB40Q9NUA8 1239 aa25.71■■□□□ 1.71
VSX1-204ENST00000409958 AKAP2Q9Y2D5 859 aa25.71■■□□□ 1.71
VSX1-204ENST00000409958 FRAT2O75474 233 aaPredicted RBP25.7■■□□□ 1.71
VSX1-204ENST00000409958 CDC37L1Q7L3B6 337 aa25.7■■□□□ 1.71
VSX1-204ENST00000409958 CREBZFQ9NS37 354 aa25.7■■□□□ 1.71
VSX1-204ENST00000409958 IQSEC3Q9UPP2 1182 aaPredicted RBP25.7■■□□□ 1.71
VSX1-204ENST00000409958 SCARF1Q14162 830 aa25.69■■□□□ 1.7
VSX1-204ENST00000409958 MFSD14BQ5SR56 506 aa25.69■■□□□ 1.7
VSX1-204ENST00000409958 GLIS2Q9BZE0 524 aaPredicted RBP25.69■■□□□ 1.7
VSX1-204ENST00000409958 TMEM88BA6NKF7 163 aa25.68■■□□□ 1.7
VSX1-204ENST00000409958 DNAJC5GQ8N7S2 189 aa25.68■■□□□ 1.7
VSX1-204ENST00000409958 DCPSQ96C86 337 aaKnown RBP25.68■■□□□ 1.7
VSX1-204ENST00000409958 GGA3Q9NZ52 723 aa25.68■■□□□ 1.7
VSX1-204ENST00000409958 NOP58Q9Y2X3 529 aaKnown RBP25.68■■□□□ 1.7
VSX1-204ENST00000409958 TRAF5O00463 557 aa25.67■■□□□ 1.7
VSX1-204ENST00000409958 SURF6O75683 361 aaKnown RBP25.67■■□□□ 1.7
VSX1-204ENST00000409958 FMR1Q06787 632 aaKnown RBP eCLIP25.67■■□□□ 1.7
VSX1-204ENST00000409958 TBC1D22AQ8WUA7 517 aa25.67■■□□□ 1.7
VSX1-204ENST00000409958 A0A1B0GUL7 405 aa25.66■■□□□ 1.7
VSX1-204ENST00000409958 TIMM10P62072 90 aa25.66■■□□□ 1.7
VSX1-204ENST00000409958 CHAF1AQ13111 956 aaPredicted RBP25.66■■□□□ 1.7
VSX1-204ENST00000409958 KRT26Q7Z3Y9 468 aa25.66■■□□□ 1.7
VSX1-204ENST00000409958 GNL3LQ9NVN8 582 aaKnown RBP25.66■■□□□ 1.7
VSX1-204ENST00000409958 ASTN2O75129 1339 aaPredicted RBP25.66■■□□□ 1.7
VSX1-204ENST00000409958 F8W031 263 aaPredicted RBP25.65■■□□□ 1.7
VSX1-204ENST00000409958 WNT10BO00744 389 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 ZBTB22O15209 634 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 NBPF9Q3BBW0 867 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 USP48Q86UV5 1035 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 RPAP2Q8IXW5 612 aaPredicted RBP25.65■■□□□ 1.7
VSX1-204ENST00000409958 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.65■■□□□ 1.7
VSX1-204ENST00000409958 POLR2AP24928 1970 aaKnown RBP25.65■■□□□ 1.7
VSX1-204ENST00000409958 PITPNM2Q9BZ72 1349 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 ARAP2Q8WZ64 1704 aa25.65■■□□□ 1.7
VSX1-204ENST00000409958 ADORA1P30542 326 aa25.64■■□□□ 1.7
VSX1-204ENST00000409958 OS9Q13438 667 aaPredicted RBP25.64■■□□□ 1.7
VSX1-204ENST00000409958 ANGEL2Q5VTE6 544 aaKnown RBP25.64■■□□□ 1.7
VSX1-204ENST00000409958 MTMR14Q8NCE2 650 aa25.64■■□□□ 1.7
VSX1-204ENST00000409958 KLRG1Q96E93 195 aa25.64■■□□□ 1.7
VSX1-204ENST00000409958 ZBED3Q96IU2 234 aaPredicted RBP25.64■■□□□ 1.7
VSX1-204ENST00000409958 PHKA1P46020 1223 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 RRP1P56182 461 aaKnown RBP25.63■■□□□ 1.69
VSX1-204ENST00000409958 CCDC102BQ68D86 513 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 SULF1Q8IWU6 871 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 XAGE2Q96GT9 111 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 GPR108Q9NPR9 543 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 TRPM7Q96QT4 1865 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 SEMA3EO15041 775 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 DLGAP5Q15398 846 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 NEUROD6Q96NK8 337 aa25.63■■□□□ 1.69
VSX1-204ENST00000409958 TTF2Q9UNY4 1162 aaKnown RBP25.63■■□□□ 1.69
VSX1-204ENST00000409958 CFAP100Q494V2 611 aa25.62■■□□□ 1.69
VSX1-204ENST00000409958 CST9Q5W186 159 aa25.62■■□□□ 1.69
VSX1-204ENST00000409958 WDR66Q8TBY9 1149 aa25.62■■□□□ 1.69
VSX1-204ENST00000409958 SUGT1Q9Y2Z0 365 aa25.62■■□□□ 1.69
VSX1-204ENST00000409958 ADM5C9JUS6 153 aa25.61■■□□□ 1.69
VSX1-204ENST00000409958 HMMRO75330 724 aa25.61■■□□□ 1.69
VSX1-204ENST00000409958 MKRN1Q9UHC7 482 aaKnown RBP25.61■■□□□ 1.69
VSX1-204ENST00000409958 SERPINA10Q9UK55 444 aa25.61■■□□□ 1.69
VSX1-204ENST00000409958 DENND2AQ9ULE3 1009 aa25.61■■□□□ 1.69
VSX1-204ENST00000409958 COL1A1P02452 1464 aaPredicted RBP25.6■■□□□ 1.69
VSX1-204ENST00000409958 MYH13Q9UKX3 1938 aa25.6■■□□□ 1.69
VSX1-204ENST00000409958 CELF2O95319 508 aaKnown RBP25.6■■□□□ 1.69
VSX1-204ENST00000409958 GRIK5Q16478 980 aa25.6■■□□□ 1.69
VSX1-204ENST00000409958 SIRT2Q8IXJ6 389 aa25.6■■□□□ 1.69
VSX1-204ENST00000409958 SPDYE2BA6NHP3 402 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 SPDYE6P0CI01 402 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 HSP90AB4PQ58FF6 505 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 TNNI3KQ59H18 835 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 ERC1Q8IUD2 1116 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 FPGT-TNNI3KV9GXZ4 949 aa25.59■■□□□ 1.69
VSX1-204ENST00000409958 HDLBPQ00341 1268 aaKnown RBP25.58■■□□□ 1.69
VSX1-204ENST00000409958 DLK2Q6UY11 383 aa25.58■■□□□ 1.69
VSX1-204ENST00000409958 EXOC6BQ9Y2D4 811 aa25.58■■□□□ 1.69
VSX1-204ENST00000409958 PCDHAC2Q9Y5I4 1007 aa25.58■■□□□ 1.69
VSX1-204ENST00000409958 RBM5P52756 815 aaKnown RBP eCLIP25.57■■□□□ 1.68
VSX1-204ENST00000409958 GORABQ5T7V8 394 aa25.57■■□□□ 1.68
VSX1-204ENST00000409958 APOBEC3FQ8IUX4 373 aaKnown RBP25.57■■□□□ 1.68
VSX1-204ENST00000409958 PRMT6Q96LA8 375 aaPredicted RBP25.57■■□□□ 1.68
VSX1-204ENST00000409958 MRIQ9BWK5 157 aa25.57■■□□□ 1.68
VSX1-204ENST00000409958 ZNF408Q9H9D4 720 aa25.57■■□□□ 1.68
VSX1-204ENST00000409958 ABT1Q9ULW3 272 aaKnown RBP25.57■■□□□ 1.68
VSX1-204ENST00000409958 MAST3O60307 1309 aa25.57■■□□□ 1.68
VSX1-204ENST00000409958 PDS5AQ29RF7 1337 aaKnown RBP25.57■■□□□ 1.68
VSX1-204ENST00000409958 SALL1Q9NSC2 1324 aa25.57■■□□□ 1.68
VSX1-204ENST00000409958 MYO1BO43795 1136 aa25.56■■□□□ 1.68
VSX1-204ENST00000409958 CRKP46108 304 aa25.56■■□□□ 1.68
VSX1-204ENST00000409958 RASGRF1Q13972 1273 aa25.56■■□□□ 1.68
VSX1-204ENST00000409958 CNTNAP1P78357 1384 aa25.55■■□□□ 1.68
VSX1-204ENST00000409958 RASSF10A6NK89 507 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms