RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CNTNAP3Q9BZ76 1288 aa9.47□□□□□ -0.89
USP40-202ENST00000409945 SALL4Q9UJQ4 1053 aa9.47□□□□□ -0.89
USP40-202ENST00000409945 AGLP35573 1532 aa9.47□□□□□ -0.89
USP40-202ENST00000409945 RIMS1Q86UR5 1692 aaKnown RBP9.47□□□□□ -0.89
USP40-202ENST00000409945 FER1L4A9Z1Z3 1794 aa9.47□□□□□ -0.89
USP40-202ENST00000409945 ADAMTSL4Q6UY14 1074 aa9.46□□□□□ -0.89
USP40-202ENST00000409945 VTI1BQ9UEU0 232 aa9.46□□□□□ -0.89
USP40-202ENST00000409945 KLF15Q9UIH9 416 aa9.46□□□□□ -0.89
USP40-202ENST00000409945 ATXN7L1Q9ULK2 861 aaPredicted RBP9.46□□□□□ -0.89
USP40-202ENST00000409945 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.46□□□□□ -0.89
USP40-202ENST00000409945 A2MP01023 1474 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 HDLBPQ00341 1268 aaKnown RBP9.46□□□□□ -0.9
USP40-202ENST00000409945 ARHGEF5Q12774 1597 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 MEI1Q5TIA1 1274 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 ADGBQ8N7X0 1667 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 GLIS3Q8NEA6 775 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 FBF1Q8TES7 1133 aa9.46□□□□□ -0.9
USP40-202ENST00000409945 INO80Q9ULG1 1556 aaPredicted RBP9.46□□□□□ -0.9
USP40-202ENST00000409945 MBD5Q9P267 1494 aa9.45□□□□□ -0.9
USP40-202ENST00000409945 CNTLNQ9NXG0 1405 aa9.45□□□□□ -0.9
USP40-202ENST00000409945 PCBP4P57723 403 aaKnown RBP9.45□□□□□ -0.9
USP40-202ENST00000409945 GRM2Q14416 872 aa9.45□□□□□ -0.9
USP40-202ENST00000409945 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
USP40-202ENST00000409945 HFE2Q6ZVN8 426 aa9.45□□□□□ -0.9
USP40-202ENST00000409945 GALNT12Q8IXK2 581 aa9.45□□□□□ -0.9
USP40-202ENST00000409945 BCO2Q9BYV7 579 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 MRS2Q9HD23 443 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 AK5Q9Y6K8 562 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 METTL12A8MUP2 240 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 J3QW42 95 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 DHX32Q7L7V1 743 aaKnown RBP9.44□□□□□ -0.9
USP40-202ENST00000409945 IGFLR1Q9H665 355 aa9.44□□□□□ -0.9
USP40-202ENST00000409945 A0A1W2PP55 124 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 LAMC2Q13753 1193 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 RNFT1Q5M7Z0 435 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 METTL16Q86W50 562 aaKnown RBP9.43□□□□□ -0.9
USP40-202ENST00000409945 ZKSCAN3Q9BRR0 538 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 GGT6Q6P531 493 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 TMEM87AQ8NBN3 555 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 PNMA5Q96PV4 448 aa9.43□□□□□ -0.9
USP40-202ENST00000409945 TLR7Q9NYK1 1049 aaKnown RBP9.43□□□□□ -0.9
USP40-202ENST00000409945 FGD6Q6ZV73 1430 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 PTPN23Q9H3S7 1636 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 DHX29Q7Z478 1369 aaKnown RBP9.42□□□□□ -0.9
USP40-202ENST00000409945 FANCCQ00597 558 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 SYT9Q86SS6 491 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 C12orf49Q9H741 205 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 C11orf16Q9NQ32 467 aa9.42□□□□□ -0.9
USP40-202ENST00000409945 ERBB4Q15303 1308 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 FAM50AQ14320 339 aaKnown RBP9.41□□□□□ -0.9
USP40-202ENST00000409945 NANOS1Q8WY41 292 aaKnown RBP9.41□□□□□ -0.9
USP40-202ENST00000409945 NLRP2Q9NX02 1062 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 NAGPAQ9UK23 515 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 KIF3BO15066 747 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 ATP11AP98196 1134 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 RAD51AP2Q09MP3 1159 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 LCE2CQ5TA81 110 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 C3orf58Q8NDZ4 430 aa9.41□□□□□ -0.9
USP40-202ENST00000409945 SIGLEC1Q9BZZ2 1709 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 PLXNC1O60486 1568 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 MAST1Q9Y2H9 1570 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 NFKBIEO00221 500 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 IGSF3O75054 1194 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 GADD45BO75293 160 aaPredicted RBP9.4□□□□□ -0.9
USP40-202ENST00000409945 USP17L7P0C7H9 530 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 PLAURQ03405 335 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 TBC1D8BQ0IIM8 1120 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 CEP120Q8N960 986 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 TCF12Q99081 682 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 SPG7Q9UQ90 795 aa9.4□□□□□ -0.9
USP40-202ENST00000409945 KIF4AO95239 1232 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 MAP3K6O95382 1288 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 NEFLP07196 543 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 FAM182BQ5T319 152 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 SV2AQ7L0J3 742 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 ABCB6Q9NP58 842 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 SHANK2Q9UPX8 1470 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 FBXO24O75426 580 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 EIF4BP23588 611 aaKnown RBP9.39□□□□□ -0.91
USP40-202ENST00000409945 GRIA4P48058 902 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 NCAPG2Q86XI2 1143 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 CRELD1Q96HD1 420 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 GMCL1Q96IK5 515 aa9.39□□□□□ -0.91
USP40-202ENST00000409945 NXF1Q9UBU9 619 aaKnown RBP9.39□□□□□ -0.91
USP40-202ENST00000409945 ANKRD30AQ9BXX3 1397 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 TCOF1Q13428 1488 aaKnown RBP9.38□□□□□ -0.91
USP40-202ENST00000409945 UHRF1BP1Q6BDS2 1440 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 FAM135AQ9P2D6 1515 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 PHF20L1A8MW92 1017 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 F6X3S4 739 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 KRT76Q01546 638 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 ZNF468Q5VIY5 522 aaPredicted RBP9.38□□□□□ -0.91
USP40-202ENST00000409945 DZANK1Q9NVP4 752 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 DNAJB12Q9NXW2 375 aaKnown RBP9.38□□□□□ -0.91
USP40-202ENST00000409945 MROH2AA6NES4 1674 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 SETD1BQ9UPS6 1966 aaKnown RBP9.38□□□□□ -0.91
USP40-202ENST00000409945 WASHC2CQ9Y4E1 1318 aa9.38□□□□□ -0.91
USP40-202ENST00000409945 PSAPP07602 524 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 SOX18P35713 384 aa9.37□□□□□ -0.91
USP40-202ENST00000409945 NT5DC4Q86YG4 428 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms