RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 DOCK2Q92608 1830 aa23.8■■□□□ 1.4
USP39-204ENST00000409766 COL4A1P02462 1669 aa23.8■■□□□ 1.4
USP39-204ENST00000409766 SYCE3A1L190 88 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 UBE2HP62256 183 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 APOBRQ0VD83 1088 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 MEX3CQ5U5Q3 659 aaKnown RBP23.79■■□□□ 1.4
USP39-204ENST00000409766 SYAP1Q96A49 352 aaPredicted RBP23.79■■□□□ 1.4
USP39-204ENST00000409766 LLPHQ9BRT6 129 aaKnown RBP23.79■■□□□ 1.4
USP39-204ENST00000409766 CASZ1Q86V15 1759 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 TCRBV5S4A2TA0A5A2 114 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 FIBPO43427 364 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 PDE6AP16499 860 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 HAND2P61296 217 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 RASGRF1Q13972 1273 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 ERFEQ4G0M1 354 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 RC3H1Q5TC82 1133 aaKnown RBP23.79■■□□□ 1.4
USP39-204ENST00000409766 SMARCC2Q8TAQ2 1214 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 ZNF532Q9HCE3 1301 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 NHSQ6T4R5 1651 aa23.79■■□□□ 1.4
USP39-204ENST00000409766 NASPP49321 788 aaPredicted RBP23.78■■□□□ 1.4
USP39-204ENST00000409766 CSPP1Q1MSJ5 1256 aa23.78■■□□□ 1.4
USP39-204ENST00000409766 WWC3Q9ULE0 1092 aa23.78■■□□□ 1.4
USP39-204ENST00000409766 CHRNDQ07001 517 aa23.77■■□□□ 1.4
USP39-204ENST00000409766 CHST3Q7LGC8 479 aa23.77■■□□□ 1.4
USP39-204ENST00000409766 EVCP57679 992 aa23.77■■□□□ 1.4
USP39-204ENST00000409766 SF3B3Q15393 1217 aaKnown RBP23.77■■□□□ 1.4
USP39-204ENST00000409766 FERMT3Q86UX7 667 aa23.77■■□□□ 1.4
USP39-204ENST00000409766 ZNF274Q96GC6 653 aaPredicted RBP23.77■■□□□ 1.4
USP39-204ENST00000409766 CDC5LQ99459 802 aaKnown RBP23.77■■□□□ 1.4
USP39-204ENST00000409766 BCL2L12Q9HB09 334 aa23.77■■□□□ 1.4
USP39-204ENST00000409766 ZNF213O14771 459 aa23.76■■□□□ 1.39
USP39-204ENST00000409766 RBSNQ9H1K0 784 aa23.76■■□□□ 1.39
USP39-204ENST00000409766 AFF2P51816 1311 aa23.76■■□□□ 1.39
USP39-204ENST00000409766 C3orf67Q6ZVT6 689 aa23.76■■□□□ 1.39
USP39-204ENST00000409766 NSUN7Q8NE18 718 aaKnown RBP23.76■■□□□ 1.39
USP39-204ENST00000409766 RPS6KA4O75676 772 aa23.75■■□□□ 1.39
USP39-204ENST00000409766 CTDNEP1O95476 244 aa23.75■■□□□ 1.39
USP39-204ENST00000409766 PDIA3P30101 505 aaKnown RBP23.75■■□□□ 1.39
USP39-204ENST00000409766 TBC1D9BQ66K14 1250 aa23.75■■□□□ 1.39
USP39-204ENST00000409766 SMIM5Q71RC9 77 aa23.75■■□□□ 1.39
USP39-204ENST00000409766 MB21D2Q8IYB1 491 aaPredicted RBP23.75■■□□□ 1.39
USP39-204ENST00000409766 GJD4Q96KN9 370 aaPredicted RBP23.75■■□□□ 1.39
USP39-204ENST00000409766 A0A1B0GUL6 1792 aa23.75■■□□□ 1.39
USP39-204ENST00000409766 BCAMP50895 628 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 NARFQ9UHQ1 456 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 TAF1P21675 1872 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 KRT85P78386 507 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 SLC10A5Q5PT55 438 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 NCOA7Q8NI08 942 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 DDX11Q96FC9 970 aa23.74■■□□□ 1.39
USP39-204ENST00000409766 MCM5P33992 734 aa23.73■■□□□ 1.39
USP39-204ENST00000409766 MAP3K12Q12852 859 aa23.73■■□□□ 1.39
USP39-204ENST00000409766 STRBPQ96SI9 672 aaKnown RBP23.73■■□□□ 1.39
USP39-204ENST00000409766 NBPF3Q9H094 633 aa23.73■■□□□ 1.39
USP39-204ENST00000409766 PHF14O94880 888 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 FAM182BQ5T319 152 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 FAM173BQ6P4H8 233 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 BICDL1Q6ZP65 573 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 ANKRD18AQ8IVF6 992 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 RTN4Q9NQC3 1192 aaKnown RBP23.72■■□□□ 1.39
USP39-204ENST00000409766 WDR19Q8NEZ3 1342 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 PRC1O43663 620 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 CCT2P78371 535 aaKnown RBP23.72■■□□□ 1.39
USP39-204ENST00000409766 HMGN5P82970 282 aaKnown RBP23.72■■□□□ 1.39
USP39-204ENST00000409766 FAM184AQ8NB25 1140 aa23.72■■□□□ 1.39
USP39-204ENST00000409766 SALL1Q9NSC2 1324 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 PTPDC1A2A3K4 754 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 ANTXR2P58335 489 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 MAGEB6Q8N7X4 407 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 AIDAQ96BJ3 306 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 NCOA5Q9HCD5 579 aaKnown RBP23.71■■□□□ 1.39
USP39-204ENST00000409766 GPHNQ9NQX3 736 aaPredicted RBP23.71■■□□□ 1.39
USP39-204ENST00000409766 BSDC1Q9NW68 430 aaPredicted RBP23.71■■□□□ 1.39
USP39-204ENST00000409766 COL24A1Q17RW2 1714 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 ELP1O95163 1332 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 LY75O60449 1722 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 CCDC183Q5T5S1 534 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 TTC6Q86TZ1 520 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 FAM43AQ8N2R8 423 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 CHMP4CQ96CF2 233 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 SRP68Q9UHB9 627 aaKnown RBP23.71■■□□□ 1.39
USP39-204ENST00000409766 CCNL1Q9UK58 526 aaPredicted RBP23.71■■□□□ 1.39
USP39-204ENST00000409766 TAF1LQ8IZX4 1826 aa23.71■■□□□ 1.39
USP39-204ENST00000409766 GNPATO15228 680 aa23.7■■□□□ 1.38
USP39-204ENST00000409766 RALYLQ86SE5 291 aaKnown RBP23.7■■□□□ 1.38
USP39-204ENST00000409766 SBF2Q86WG5 1849 aa23.7■■□□□ 1.38
USP39-204ENST00000409766 APPP05067 770 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 RESTQ13127 1097 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 ALX1Q15699 326 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 PPP1R9BQ96SB3 815 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 ZNF804BA4D1E1 1349 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 ZMYM6O95789 1325 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 H3BQV1 296 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 ONECUT3O60422 494 aaPredicted RBP23.69■■□□□ 1.38
USP39-204ENST00000409766 GTF2E1P29083 439 aaPredicted RBP23.69■■□□□ 1.38
USP39-204ENST00000409766 IFFO2Q5TF58 517 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 TBC1D10CQ8IV04 446 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 NYXQ9GZU5 481 aa23.69■■□□□ 1.38
USP39-204ENST00000409766 NAP1L2Q9ULW6 460 aaPredicted RBP23.69■■□□□ 1.38
USP39-204ENST00000409766 CCDC173Q0VFZ6 552 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms