RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 NDUFB9Q9Y6M9 179 aa19.52■□□□□ 0.72
HMGA1-204ENST00000401473 DDNO94850 711 aaPredicted RBP19.52■□□□□ 0.71
HMGA1-204ENST00000401473 TTC39AQ5SRH9 613 aa19.52■□□□□ 0.71
HMGA1-204ENST00000401473 GNL3LQ9NVN8 582 aaKnown RBP19.52■□□□□ 0.71
HMGA1-204ENST00000401473 HMG20BQ9P0W2 317 aa19.52■□□□□ 0.71
HMGA1-204ENST00000401473 COL1A1P02452 1464 aaPredicted RBP19.51■□□□□ 0.71
HMGA1-204ENST00000401473 PSMD14O00487 310 aa19.51■□□□□ 0.71
HMGA1-204ENST00000401473 PLEKHM2Q8IWE5 1019 aa19.51■□□□□ 0.71
HMGA1-204ENST00000401473 SNRKQ9NRH2 765 aa19.51■□□□□ 0.71
HMGA1-204ENST00000401473 USP17L3A6NCW0 530 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 USP17L4A6NCW7 530 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 GLTPD2A6NH11 291 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 ZBTB22O15209 634 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 VIL1P09327 827 aaKnown RBP19.5■□□□□ 0.71
HMGA1-204ENST00000401473 MX1P20591 662 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 DACT2Q5SW24 774 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 STRIP1Q5VSL9 837 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 USP17L1Q7RTZ2 530 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 ECHDC1Q9NTX5 307 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 MYH13Q9UKX3 1938 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 ATP5JP18859 108 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 PDE1AP54750 535 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 EIF6P56537 245 aaKnown RBP19.5■□□□□ 0.71
HMGA1-204ENST00000401473 CHAF1AQ13111 956 aaPredicted RBP19.5■□□□□ 0.71
HMGA1-204ENST00000401473 CIAPIN1Q6FI81 312 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 SPATA5Q8NB90 893 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 ZNF526Q8TF50 670 aaPredicted RBP19.5■□□□□ 0.71
HMGA1-204ENST00000401473 BOLA2Q9H3K6 86 aa19.5■□□□□ 0.71
HMGA1-204ENST00000401473 ZBTB12Q9Y330 459 aaPredicted RBP19.5■□□□□ 0.71
HMGA1-204ENST00000401473 FAM205AQ6ZU69 1335 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 ZNF646O15015 1829 aaPredicted RBP19.49■□□□□ 0.71
HMGA1-204ENST00000401473 PSME4Q14997 1843 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 SEMA3EO15041 775 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 UQCRFS1P1P0C7P4 283 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 CERS5Q8N5B7 392 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 PI4K2BQ8TCG2 481 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 STAP2Q9UGK3 403 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 DENND2AQ9ULE3 1009 aa19.49■□□□□ 0.71
HMGA1-204ENST00000401473 ZAP70P43403 619 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 GRIK5Q16478 980 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 FBXW7Q969H0 707 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 GJA3Q9Y6H8 435 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 CYP2E1P05181 493 aaPredicted RBP19.48■□□□□ 0.71
HMGA1-204ENST00000401473 DPY19L2Q6NUT2 758 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 TBC1D9Q6ZT07 1266 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 GPC2Q8N158 579 aa19.48■□□□□ 0.71
HMGA1-204ENST00000401473 TNIP1Q15025 636 aa19.47■□□□□ 0.71
HMGA1-204ENST00000401473 EDC3Q96F86 508 aaKnown RBP19.47■□□□□ 0.71
HMGA1-204ENST00000401473 MYO5AQ9Y4I1 1855 aaKnown RBP19.47■□□□□ 0.71
HMGA1-204ENST00000401473 TTC41PQ6P2S7 1318 aa19.47■□□□□ 0.71
HMGA1-204ENST00000401473 MFSD14BQ5SR56 506 aa19.46■□□□□ 0.71
HMGA1-204ENST00000401473 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.46■□□□□ 0.71
HMGA1-204ENST00000401473 GMLQ99445 158 aa19.46■□□□□ 0.71
HMGA1-204ENST00000401473 OSBPL3Q9H4L5 887 aa19.46■□□□□ 0.71
HMGA1-204ENST00000401473 ANTXR1Q9H6X2 564 aa19.46■□□□□ 0.71
HMGA1-204ENST00000401473 POTECB2RU33 542 aa19.45■□□□□ 0.7
HMGA1-204ENST00000401473 RSBN1LQ6PCB5 846 aaPredicted RBP19.45■□□□□ 0.7
HMGA1-204ENST00000401473 ZNF784Q8NCA9 323 aaPredicted RBP19.45■□□□□ 0.7
HMGA1-204ENST00000401473 WDR66Q8TBY9 1149 aa19.45■□□□□ 0.7
HMGA1-204ENST00000401473 GPATCH3Q96I76 525 aa19.45■□□□□ 0.7
HMGA1-204ENST00000401473 HAUS7Q99871 368 aa19.45■□□□□ 0.7
HMGA1-204ENST00000401473 PDS5AQ29RF7 1337 aaKnown RBP19.45■□□□□ 0.7
HMGA1-204ENST00000401473 SCNN1DP51172 638 aa19.44■□□□□ 0.7
HMGA1-204ENST00000401473 NMRK2Q9NPI5 230 aa19.44■□□□□ 0.7
HMGA1-204ENST00000401473 MAP4K4O95819 1239 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 PRDX5P30044 214 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 GMPSP49915 693 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 L3MBTL3Q96JM7 780 aaPredicted RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 DNAJC2Q99543 621 aaKnown RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 ABCF2Q9UG63 623 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 SHTN1A0MZ66 631 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 ERC2O15083 957 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 GLRX3O76003 335 aaKnown RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 FKBP1AP62942 108 aaKnown RBP19.43■□□□□ 0.7
HMGA1-204ENST00000401473 KIAA0825Q8IV33 1275 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 TBC1D22AQ8WUA7 517 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 SALL1Q9NSC2 1324 aa19.43■□□□□ 0.7
HMGA1-204ENST00000401473 GOLIM4O00461 696 aa19.42■□□□□ 0.7
HMGA1-204ENST00000401473 PIH1D3Q9NQM4 214 aaKnown RBP19.42■□□□□ 0.7
HMGA1-204ENST00000401473 F8W031 263 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-204ENST00000401473 AGBL3Q8NEM8 1001 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 RRAGCQ9HB90 399 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 EPS15P42566 896 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 ZNF384Q8TF68 577 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 DPF2Q92785 391 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 GPBP1L1Q9HC44 474 aaPredicted RBP19.41■□□□□ 0.7
HMGA1-204ENST00000401473 PAG1Q9NWQ8 432 aa19.41■□□□□ 0.7
HMGA1-204ENST00000401473 RGS3P49796 1198 aa19.4■□□□□ 0.7
HMGA1-204ENST00000401473 GPRC5DQ9NZD1 345 aa19.4■□□□□ 0.7
HMGA1-204ENST00000401473 CNOT7Q9UIV1 285 aaKnown RBP19.4■□□□□ 0.7
HMGA1-204ENST00000401473 AOX1Q06278 1338 aa19.39■□□□□ 0.7
HMGA1-204ENST00000401473 RPS12P25398 132 aaKnown RBP19.39■□□□□ 0.7
HMGA1-204ENST00000401473 MYO3BQ8WXR4 1341 aa19.39■□□□□ 0.69
HMGA1-204ENST00000401473 LRP2BPQ9P2M1 347 aa19.39■□□□□ 0.69
HMGA1-204ENST00000401473 TTF2Q9UNY4 1162 aaKnown RBP19.39■□□□□ 0.69
HMGA1-204ENST00000401473 WDR90Q96KV7 1748 aa19.38■□□□□ 0.69
HMGA1-204ENST00000401473 EGFRP00533 1210 aa19.38■□□□□ 0.69
HMGA1-204ENST00000401473 CHGBP05060 677 aa19.38■□□□□ 0.69
HMGA1-204ENST00000401473 LDHBP07195 334 aaKnown RBP19.38■□□□□ 0.69
HMGA1-204ENST00000401473 USP17L8P0C7I0 530 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms