RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 CCDC30Q5VVM6 783 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 USP17L1Q7RTZ2 530 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 C8orf58Q8NAV2 365 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 CDCA5Q96FF9 252 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 CASP8AP2Q9UKL3 1982 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 LAMB2P55268 1798 aa11.28□□□□□ -0.6
CAPN3-208ENST00000397204 DSG2Q14126 1118 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 ANGEL2Q5VTE6 544 aaKnown RBP11.27□□□□□ -0.61
CAPN3-208ENST00000397204 KSR2Q6VAB6 950 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 CDC5LQ99459 802 aaKnown RBP11.27□□□□□ -0.61
CAPN3-208ENST00000397204 CRISPLD2Q9H0B8 497 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 MYOZ2Q9NPC6 264 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 BSDC1Q9NW68 430 aaPredicted RBP11.27□□□□□ -0.61
CAPN3-208ENST00000397204 ASTN2O75129 1339 aaPredicted RBP11.27□□□□□ -0.61
CAPN3-208ENST00000397204 PITPNM2Q9BZ72 1349 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 TAF1P21675 1872 aa11.27□□□□□ -0.61
CAPN3-208ENST00000397204 ZNF609O15014 1411 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 LRRC37AA6NMS7 1700 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 PDE4DIPQ5VU43 2346 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 FOXK1P85037 733 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 PLPP6Q8IY26 295 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 OGFOD1Q8N543 542 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 TTLL11Q8NHH1 800 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 JARID2Q92833 1246 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-208ENST00000397204 PRKRIP1Q9H875 184 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-208ENST00000397204 MINPP1Q9UNW1 487 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 MAP3K2Q9Y2U5 619 aa11.26□□□□□ -0.61
CAPN3-208ENST00000397204 POLR2AP24928 1970 aaKnown RBP11.25□□□□□ -0.61
CAPN3-208ENST00000397204 PI4KAP2A4QPH2 592 aa11.25□□□□□ -0.61
CAPN3-208ENST00000397204 EMP3P54852 163 aa11.25□□□□□ -0.61
CAPN3-208ENST00000397204 CTSWP56202 376 aa11.25□□□□□ -0.61
CAPN3-208ENST00000397204 NEXNQ0ZGT2 675 aa11.25□□□□□ -0.61
CAPN3-208ENST00000397204 PI4KAP1Q8N8J0 262 aa11.25□□□□□ -0.61
CAPN3-208ENST00000397204 CCDC85AQ96PX6 553 aaPredicted RBP11.25□□□□□ -0.61
CAPN3-208ENST00000397204 DDX60Q8IY21 1712 aaKnown RBP11.24□□□□□ -0.61
CAPN3-208ENST00000397204 TNRC18O15417 2968 aaPredicted RBP11.24□□□□□ -0.61
CAPN3-208ENST00000397204 IGKV5-2P06315 115 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 HOXB1P14653 301 aaPredicted RBP11.24□□□□□ -0.61
CAPN3-208ENST00000397204 PDE4AP27815 886 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 CCT4P50991 539 aaKnown RBP11.24□□□□□ -0.61
CAPN3-208ENST00000397204 STRIP1Q5VSL9 837 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 CTU1Q7Z7A3 348 aaKnown RBP11.24□□□□□ -0.61
CAPN3-208ENST00000397204 RASAL3Q86YV0 1011 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 COA1Q9GZY4 146 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 ZSWIM6Q9HCJ5 1215 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 LEMD3Q9Y2U8 911 aa11.24□□□□□ -0.61
CAPN3-208ENST00000397204 WTIPA6NIX2 430 aaPredicted RBP11.23□□□□□ -0.61
CAPN3-208ENST00000397204 UBE2Q2LH0YL09 131 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 H7C1W4 665 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 TM4SF4P48230 202 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 PKN2Q16513 984 aaKnown RBP11.23□□□□□ -0.61
CAPN3-208ENST00000397204 NBPF9Q3BBW0 867 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 ARSIQ5FYB1 569 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 DACT2Q5SW24 774 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 GPR153Q6NV75 609 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 TSPYL6Q8N831 410 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 STK31Q9BXU1 1019 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 GREM2Q9H772 168 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 MYO3BQ8WXR4 1341 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 MED23Q9ULK4 1368 aa11.23□□□□□ -0.61
CAPN3-208ENST00000397204 COL4A1P02462 1669 aa11.22□□□□□ -0.61
CAPN3-208ENST00000397204 NF2P35240 595 aa11.22□□□□□ -0.61
CAPN3-208ENST00000397204 TTLL5Q6EMB2 1281 aa11.22□□□□□ -0.61
CAPN3-208ENST00000397204 KHSRPQ92945 711 aaKnown RBP eCLIP11.22□□□□□ -0.61
CAPN3-208ENST00000397204 LARP6Q9BRS8 491 aaKnown RBP11.22□□□□□ -0.61
CAPN3-208ENST00000397204 ANKRD2Q9GZV1 360 aa11.22□□□□□ -0.61
CAPN3-208ENST00000397204 NEURL1BA8MQ27 555 aa11.21□□□□□ -0.61
CAPN3-208ENST00000397204 WNT10BO00744 389 aa11.21□□□□□ -0.61
CAPN3-208ENST00000397204 IGHMBP2P38935 993 aaKnown RBP11.21□□□□□ -0.61
CAPN3-208ENST00000397204 TTLL12Q14166 644 aaPredicted RBP11.21□□□□□ -0.61
CAPN3-208ENST00000397204 NOM1Q5C9Z4 860 aaKnown RBP11.21□□□□□ -0.61
CAPN3-208ENST00000397204 PLA2G12BQ9BX93 195 aa11.21□□□□□ -0.61
CAPN3-208ENST00000397204 SCN9AQ15858 1988 aa11.21□□□□□ -0.62
CAPN3-208ENST00000397204 CSF1RP07333 972 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 CCDC27Q2M243 656 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 CWF19L2Q2TBE0 894 aaKnown RBP11.2□□□□□ -0.62
CAPN3-208ENST00000397204 PPP1R15BQ5SWA1 713 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 PRAMEF18Q5VWM3 479 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 MOB2Q70IA6 237 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 ARMC9Q7Z3E5 817 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 TXNRD3Q86VQ6 643 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 MPHOSPH8Q99549 860 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 MXD3Q9BW11 206 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 PCDH10Q9P2E7 1040 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 HDAC9Q9UKV0 1011 aa11.2□□□□□ -0.62
CAPN3-208ENST00000397204 ZNF804BA4D1E1 1349 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 FAM205CA6NFA0 338 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 TBC1D8O95759 1140 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 INHBEP58166 350 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 SREBF2Q12772 1141 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 GCKRQ14397 625 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 UBE3BQ7Z3V4 1068 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 APOBEC3FQ8IUX4 373 aaKnown RBP11.19□□□□□ -0.62
CAPN3-208ENST00000397204 ZNF296Q8WUU4 475 aaPredicted RBP11.19□□□□□ -0.62
CAPN3-208ENST00000397204 FBXW7Q969H0 707 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 ZBED3Q96IU2 234 aaPredicted RBP11.19□□□□□ -0.62
CAPN3-208ENST00000397204 MYH16Q9H6N6 1097 aa11.19□□□□□ -0.62
CAPN3-208ENST00000397204 SCAF8Q9UPN6 1271 aaKnown RBP11.19□□□□□ -0.62
CAPN3-208ENST00000397204 GPR25O00155 361 aa11.18□□□□□ -0.62
CAPN3-208ENST00000397204 ITGA6P23229 1130 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms