RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 HS1BP3Q53T59 392 aa11.6□□□□□ -0.55
COL4A4-201ENST00000396625 PPP1R21Q6ZMI0 780 aa11.6□□□□□ -0.55
COL4A4-201ENST00000396625 IRX5P78411 483 aaPredicted RBP11.6□□□□□ -0.55
COL4A4-201ENST00000396625 HDAC9Q9UKV0 1011 aa11.6□□□□□ -0.55
COL4A4-201ENST00000396625 UBL4BQ8N7F7 174 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 PROCA1Q8NCQ7 364 aaPredicted RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 SMARCC2Q8TAQ2 1214 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 MRPL46Q9H2W6 279 aaKnown RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 HFM1A2PYH4 1435 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 WDR46O15213 610 aaKnown RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 MRPS27Q92552 414 aaKnown RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 PFDN1O60925 122 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 IRX4P78413 519 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 GABPAQ06546 454 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 UTP14CQ5TAP6 766 aaKnown RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 ANKRD50Q9ULJ7 1429 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 LMOD1P29536 600 aaPredicted RBP11.59□□□□□ -0.55
COL4A4-201ENST00000396625 AP1ARQ63HQ0 302 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 NCOA7Q8NI08 942 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 TSPY2A6NKD2 308 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 CCDC122Q5T0U0 273 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 HEATR3Q7Z4Q2 680 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 PLCB1Q9NQ66 1216 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 STK38LQ9Y2H1 464 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 PPFIA3O75145 1194 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 CNGA4Q8IV77 575 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 MICAL1Q8TDZ2 1067 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 ZKSCAN5Q9Y2L8 839 aa11.59□□□□□ -0.55
COL4A4-201ENST00000396625 LUC7L3O95232 432 aaKnown RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 TYRO3Q06418 890 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 MRRFQ96E11 262 aaKnown RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 GOLGA6BA6NDN3 693 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 RASSF2P50749 326 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 MAP3K21Q5TCX8 1036 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 PRAM1Q96QH2 718 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 MYCBPQ99417 103 aaPredicted RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 CASKIN1Q8WXD9 1431 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 DHX29Q7Z478 1369 aaKnown RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 C8orf74Q6P047 294 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 CCDC117Q8IWD4 279 aaPredicted RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 IFT20Q8IY31 132 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 DNAJC25Q9H1X3 360 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 HOMEZQ8IX15 550 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 ANKFY1Q9P2R3 1169 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 TIAM1Q13009 1591 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 HLA-DOAP06340 250 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 SESN3P58005 492 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 HAND2P61296 217 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 NCBP1Q09161 790 aaKnown RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 USP48Q86UV5 1035 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 GABPB2Q8TAK5 448 aaPredicted RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 Q9H521 79 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 FAF1Q9UNN5 650 aaPredicted RBP11.58□□□□□ -0.56
COL4A4-201ENST00000396625 SPECC1L-ADORA2AF8WAN1 911 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 CALM1P0DP23 149 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 CALM2P0DP24 149 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 CALM3P0DP25 149 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 ATICP31939 592 aa11.58□□□□□ -0.56
COL4A4-201ENST00000396625 DNAJC8O75937 253 aaPredicted RBP11.57□□□□□ -0.56
COL4A4-201ENST00000396625 MARCKSP29966 332 aaPredicted RBP11.57□□□□□ -0.56
COL4A4-201ENST00000396625 DENND2CQ68D51 928 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 FAM212AQ96EL1 285 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 BCAP29Q9UHQ4 241 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 MIS18AQ9NYP9 233 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 KRT5P13647 590 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 SYT10Q6XYQ8 523 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 NBPF7P0C2Y1 421 aaPredicted RBP11.57□□□□□ -0.56
COL4A4-201ENST00000396625 EVCP57679 992 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 TAF12Q16514 161 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 FRMD4BQ9Y2L6 1034 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 BAG3O95817 575 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 KIFAP3Q92845 792 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 VSIG1Q86XK7 387 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 HAUS8Q9BT25 410 aa11.57□□□□□ -0.56
COL4A4-201ENST00000396625 TRIM6Q9C030 488 aaPredicted RBP11.57□□□□□ -0.56
COL4A4-201ENST00000396625 PDCD2Q16342 344 aaPredicted RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 DUSP27Q5VZP5 1158 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 DAPK1P53355 1430 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 NSD3Q9BZ95 1437 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 IFIT1BQ5T764 474 aaKnown RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 WTAPQ15007 396 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 CDK19Q9BWU1 502 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 FAM204AQ9H8W3 233 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 DCAF17Q5H9S7 520 aaPredicted RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 GAPVD1Q14C86 1478 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 PEX19P40855 299 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 PPFIA1Q13136 1202 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 RRS1Q15050 365 aaKnown RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 RASEFQ8IZ41 740 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 PHEXP78562 749 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 SPOPO43791 374 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 RBBP5Q15291 538 aaKnown RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 HHATQ5VTY9 493 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 MCM10Q7L590 875 aa11.56□□□□□ -0.56
COL4A4-201ENST00000396625 LEO1Q8WVC0 666 aaPredicted RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 NAPGQ99747 312 aaPredicted RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 TACO1Q9BSH4 297 aaKnown RBP11.56□□□□□ -0.56
COL4A4-201ENST00000396625 FANCD2Q9BXW9 1451 aa11.55□□□□□ -0.56
COL4A4-201ENST00000396625 TSPY3P0CV98 308 aa11.55□□□□□ -0.56
COL4A4-201ENST00000396625 TSPY8P0CW00 308 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms