RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TNIP1Q15025 636 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 USP17L1Q7RTZ2 530 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 EXOC6BQ9Y2D4 811 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 MCAMP43121 646 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 TAF7LQ5H9L4 462 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 FKBP1CQ5VVH2 108 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 C9orf131Q5VYM1 1079 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 HHIPL2Q6UWX4 724 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 CERS5Q8N5B7 392 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 WDR66Q8TBY9 1149 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ZNF384Q8TF68 577 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ZNF277Q9NRM2 450 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 HMG20BQ9P0W2 317 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 SERPINA10Q9UK55 444 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 NSFL1CQ9UNZ2 370 aaKnown RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 SCNN1DP51172 638 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 CXCL9Q07325 125 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 CERS3Q8IU89 383 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 NIM1KQ8IY84 436 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 CLASRPQ8N2M8 674 aaKnown RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ZGPATQ8N5A5 531 aaKnown RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 TMX4Q9H1E5 349 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 TLR7Q9NYK1 1049 aaKnown RBP8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ANKIB1Q9P2G1 1089 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 ZMYM6O95789 1325 aa8.62□□□□□ -1.03
LIMA1-202ENST00000394943 PHKA1P46020 1223 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 PPP4CP60510 307 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 RASGRF1Q13972 1273 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 CAVIN4Q5BKX8 364 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 DBNDD2Q9BQY9 259 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 ZC3H12CQ9C0D7 883 aaKnown RBP8.61□□□□□ -1.03
LIMA1-202ENST00000394943 PPIP5K2O43314 1243 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 IL17RAQ96F46 866 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 ECHDC1Q9NTX5 307 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 MAST3O60307 1309 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 PDE1AP54750 535 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 MAP3K10Q02779 954 aa8.61□□□□□ -1.03
LIMA1-202ENST00000394943 METTL16Q86W50 562 aaKnown RBP8.61□□□□□ -1.03
LIMA1-202ENST00000394943 ZC3H15Q8WU90 426 aaKnown RBP8.61□□□□□ -1.03
LIMA1-202ENST00000394943 CCDC85AQ96PX6 553 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-202ENST00000394943 BCAMP50895 628 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 ZDHHC15Q96MV8 337 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 ATRNL1Q5VV63 1379 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 TTF1Q15361 905 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-202ENST00000394943 CIAPIN1Q6FI81 312 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 ARHGAP27Q6ZUM4 889 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 SPATA5Q8NB90 893 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 GNL3LQ9NVN8 582 aaKnown RBP8.6□□□□□ -1.03
LIMA1-202ENST00000394943 GPRC5DQ9NZD1 345 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 PSMD14O00487 310 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 EPB41L2O43491 1005 aaKnown RBP8.6□□□□□ -1.03
LIMA1-202ENST00000394943 CYP2E1P05181 493 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-202ENST00000394943 TIMM10P62072 90 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 SCARF1Q14162 830 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 USP50Q70EL3 339 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-202ENST00000394943 CHMP3Q9Y3E7 222 aa8.6□□□□□ -1.03
LIMA1-202ENST00000394943 ATAD5Q96QE3 1844 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 GLRX3O76003 335 aaKnown RBP8.59□□□□□ -1.03
LIMA1-202ENST00000394943 GYG1P46976 350 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 GPR162Q16538 588 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 SIL1Q9H173 461 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 LOC285556D6RIA3 1793 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 MYH1P12882 1939 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 MX1P20591 662 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 LARGE2Q8N3Y3 721 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 HELBQ8NG08 1087 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-202ENST00000394943 MKRN1Q9UHC7 482 aaKnown RBP8.59□□□□□ -1.03
LIMA1-202ENST00000394943 DOCK1Q14185 1865 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 GPR75-ASB3A0A0A6YYF3 556 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 UNCXA6NJT0 531 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 UBE3CQ15386 1083 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 CCDC158Q5M9N0 1113 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 AACSQ86V21 672 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 NSUN4Q96CB9 384 aaKnown RBP8.59□□□□□ -1.03
LIMA1-202ENST00000394943 ROBO3Q96MS0 1386 aa8.59□□□□□ -1.03
LIMA1-202ENST00000394943 SNAP23O00161 211 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 SPTY2D1Q68D10 685 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-202ENST00000394943 POTEDQ86YR6 584 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 RNF181Q9P0P0 153 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 PPP2R3BQ9Y5P8 575 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 SSC5DA1L4H1 1573 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 EIF6P56537 245 aaKnown RBP8.58□□□□□ -1.04
LIMA1-202ENST00000394943 TTC22Q5TAA0 569 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 IDI2Q9BXS1 227 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 C6orf229H3BNL8 230 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 BMP2KLQ5H9B9 411 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 JDP2Q8WYK2 163 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 KCNQ5Q9NR82 932 aa8.58□□□□□ -1.04
LIMA1-202ENST00000394943 ERC2O15083 957 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 NT5C2P49902 561 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 KBTBD3Q8NAB2 608 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 ADARB2Q9NS39 739 aaKnown RBP8.57□□□□□ -1.04
LIMA1-202ENST00000394943 MROH7-TTC4A0A0A0MT08 1334 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 PASKQ96RG2 1323 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 GPR101Q96P66 508 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-202ENST00000394943 PIH1D3Q9NQM4 214 aaKnown RBP8.57□□□□□ -1.04
LIMA1-202ENST00000394943 ZFYP08048 801 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-202ENST00000394943 GSPT1P15170 499 aaKnown RBP8.57□□□□□ -1.04
LIMA1-202ENST00000394943 ADD2P35612 726 aa8.57□□□□□ -1.04
LIMA1-202ENST00000394943 GPATCH3Q96I76 525 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms