RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CYP19A1P11511 503 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 ZSCAN25Q6NSZ9 544 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 LEO1Q8WVC0 666 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 ZNF500O60304 480 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 ADCY5O95622 1261 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 SCRN1Q12765 414 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 HLFQ16534 295 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 SLFNL1Q499Z3 407 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 STOX1Q6ZVD7 989 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 NUP188Q5SRE5 1749 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 IRS4O14654 1257 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 ADORA1P30542 326 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 FOSBP53539 338 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 CCT2P78371 535 aaKnown RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 GRIPAP1Q4V328 841 aa11.3□□□□□ -0.6
COL6A3-204ENST00000392003 RALYLQ86SE5 291 aaKnown RBP11.3□□□□□ -0.6
COL6A3-204ENST00000392003 UQCRHLA0A096LP55 91 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 UQCRHP07919 91 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 APPBP2Q92624 585 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 PTPDC1A2A3K4 754 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 M0R2C6 588 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 NPHP1O15259 732 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 KDM4AO75164 1064 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 CSF1RP07333 972 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 ZNF396Q96N95 335 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 CCDC87Q9NVE4 849 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 DACT1Q9NYF0 836 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 CDHR2Q9BYE9 1310 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 LOC102724159A0A0B4J2E5 919 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 LOC102724428A0A0B4J2F2 783 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 ITGA6P23229 1130 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 ZAP70P43403 619 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 SIK1P57059 783 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 PWP2Q15269 919 aaKnown RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 CAMK4Q16566 473 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 NAA16Q6N069 864 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 SASS6Q6UVJ0 657 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 SMARCC2Q8TAQ2 1214 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 SMARCC1Q92922 1105 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 OSBP2Q969R2 916 aa11.29□□□□□ -0.6
COL6A3-204ENST00000392003 ZNF274Q96GC6 653 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 CCDC94Q9BW85 323 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-204ENST00000392003 DHX16O60231 1041 aaKnown RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 LIG1P18858 919 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 IL6STP40189 918 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 EXOSC10Q01780 885 aaKnown RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 RESTQ13127 1097 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 NLRP10Q86W26 655 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 SYNE4Q8N205 404 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 MARCH10Q8NA82 808 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 NSUN7Q8NE18 718 aaKnown RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 PAPPAQ13219 1627 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 ABCC12Q96J65 1359 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 TJP1Q07157 1748 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 GOLGA6L6A8MZA4 724 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 TRDNQ13061 729 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 TTF1Q15361 905 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-204ENST00000392003 CTSWP56202 376 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 HAND2P61296 217 aa11.28□□□□□ -0.6
COL6A3-204ENST00000392003 SPEF2Q9C093 1822 aa11.27□□□□□ -0.6
COL6A3-204ENST00000392003 ZNF213O14771 459 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 CEBPZQ03701 1054 aaKnown RBP11.27□□□□□ -0.61
COL6A3-204ENST00000392003 TTLL5Q6EMB2 1281 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 CHST3Q7LGC8 479 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 TTLL11Q8NHH1 800 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 TPM3P06753 285 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 CRKLP46109 303 aaKnown RBP11.27□□□□□ -0.61
COL6A3-204ENST00000392003 TYRO3Q06418 890 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 ATL3Q6DD88 541 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 NCOA7Q8NI08 942 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 FAM200AQ8TCP9 573 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 SLC4A9Q96Q91 983 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 MPHOSPH8Q99549 860 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 FUCA2Q9BTY2 467 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 GTPBP4Q9BZE4 634 aaKnown RBP11.27□□□□□ -0.61
COL6A3-204ENST00000392003 GREM2Q9H772 168 aa11.27□□□□□ -0.61
COL6A3-204ENST00000392003 CPLX1O14810 134 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 IRF6O14896 467 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 PDE8AO60658 829 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 PDIA3P30101 505 aaKnown RBP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 CCDC73Q6ZRK6 1079 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 CKAP2LQ8IYA6 745 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 AGXT2Q9BYV1 514 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 CLSTN2Q9H4D0 955 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 BCL9O00512 1426 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 SPATA31A5Q5VU36 1347 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 SPATA31A7Q8IWB4 1347 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 ZNF526Q8TF50 670 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 TRIM34Q9BYJ4 488 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 NCOA5Q9HCD5 579 aaKnown RBP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 NIP7Q9Y221 180 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 RIPOR2Q9Y4F9 1068 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 KCNQ2O43526 872 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 PRC1O43663 620 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 IDH1O75874 414 aaKnown RBP11.26□□□□□ -0.61
COL6A3-204ENST00000392003 FGAP02671 866 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 UQCRFS1P1P0C7P4 283 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 BICDL1Q6ZP65 573 aa11.26□□□□□ -0.61
COL6A3-204ENST00000392003 ZNF652Q9Y2D9 606 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms