RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SMARCA5O60264 1052 aaPredicted RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 TIMM10P62072 90 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 DOK7Q18PE1 504 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 CCDC158Q5M9N0 1113 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 C16orf71Q8IYS4 520 aaPredicted RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 AGBL3Q8NEM8 1001 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 DPF2Q92785 391 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 DBNDD1Q9H9R9 158 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 IQCA1LA6NCM1 817 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 YDJCA8MPS7 323 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 SNAP23O00161 211 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 UQCRFS1P1P0C7P4 283 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 RBM25P49756 843 aaKnown RBP12.38□□□□□ -0.43
VPS53-202ENST00000389040 GORABQ5T7V8 394 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 OTUD7AQ8TE49 926 aaPredicted RBP12.38□□□□□ -0.43
VPS53-202ENST00000389040 TBC1D22AQ8WUA7 517 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 XAGE2Q96GT9 111 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 NEUROD6Q96NK8 337 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 TBC1D2Q9BYX2 928 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 SUGT1Q9Y2Z0 365 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 FAM205AQ6ZU69 1335 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 CACNA1SQ13698 1873 aa12.38□□□□□ -0.43
VPS53-202ENST00000389040 YY1P25490 414 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 KLRK1P26718 216 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 GYG1P46976 350 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 TTLL5Q6EMB2 1281 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 GPR101Q96P66 508 aaPredicted RBP12.37□□□□□ -0.43
VPS53-202ENST00000389040 BCL11AQ9H165 835 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 DENND2AQ9ULE3 1009 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 FRAT2O75474 233 aaPredicted RBP12.37□□□□□ -0.43
VPS53-202ENST00000389040 IFIT2P09913 472 aaKnown RBP12.37□□□□□ -0.43
VPS53-202ENST00000389040 BCAMP50895 628 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 CCDC102BQ68D86 513 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 WDR66Q8TBY9 1149 aa12.37□□□□□ -0.43
VPS53-202ENST00000389040 EAF2Q96CJ1 260 aaPredicted RBP12.37□□□□□ -0.43
VPS53-202ENST00000389040 EIF5BO60841 1220 aaKnown RBP12.36□□□□□ -0.43
VPS53-202ENST00000389040 ARID4AP29374 1257 aaPredicted RBP12.36□□□□□ -0.43
VPS53-202ENST00000389040 DACT2Q5SW24 774 aa12.36□□□□□ -0.43
VPS53-202ENST00000389040 RSBN1LQ6PCB5 846 aaPredicted RBP12.36□□□□□ -0.43
VPS53-202ENST00000389040 TMED8Q6PL24 325 aaPredicted RBP12.36□□□□□ -0.43
VPS53-202ENST00000389040 ZGPATQ8N5A5 531 aaKnown RBP12.36□□□□□ -0.43
VPS53-202ENST00000389040 SBF1O95248 1867 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 RAD17O75943 681 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 AACSQ86V21 672 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.35□□□□□ -0.43
VPS53-202ENST00000389040 GPATCH3Q96I76 525 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 PSMD14O00487 310 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 VEGFAP15692 232 aaPredicted RBP12.35□□□□□ -0.43
VPS53-202ENST00000389040 GTF2IP78347 998 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 MRIQ9BWK5 157 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 OSBPL3Q9H4L5 887 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 ZNF541Q9H0D2 1346 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 SALL1Q9NSC2 1324 aa12.35□□□□□ -0.43
VPS53-202ENST00000389040 CHD4Q14839 1912 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 DICER1Q9UPY3 1922 aaKnown RBP12.34□□□□□ -0.43
VPS53-202ENST00000389040 DDNO94850 711 aaPredicted RBP12.34□□□□□ -0.43
VPS53-202ENST00000389040 LMOD1P29536 600 aaPredicted RBP12.34□□□□□ -0.43
VPS53-202ENST00000389040 NFKBIBQ15653 356 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 OGFOD1Q8N543 542 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 GMLQ99445 158 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 IL1RAPL2Q9NP60 686 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 DBNLQ9UJU6 430 aaKnown RBP12.34□□□□□ -0.43
VPS53-202ENST00000389040 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.34□□□□□ -0.43
VPS53-202ENST00000389040 COL4A5P29400 1685 aa12.34□□□□□ -0.43
VPS53-202ENST00000389040 SDSP20132 328 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 ADORA1P30542 326 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 PHKA1P46020 1223 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 TTC39AQ5SRH9 613 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 SPTY2D1Q68D10 685 aaPredicted RBP12.33□□□□□ -0.44
VPS53-202ENST00000389040 PNMA8AQ86V59 439 aaPredicted RBP12.33□□□□□ -0.44
VPS53-202ENST00000389040 GPRC5DQ9NZD1 345 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 GJA3Q9Y6H8 435 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 SPEF2Q9C093 1822 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 H7C1D1 291 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 USP17L8P0C7I0 530 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 PDE1AP54750 535 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 HDLBPQ00341 1268 aaKnown RBP12.33□□□□□ -0.44
VPS53-202ENST00000389040 DBNDD2Q9BQY9 259 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 CCDC8Q9H0W5 538 aaPredicted RBP12.33□□□□□ -0.44
VPS53-202ENST00000389040 GPBP1L1Q9HC44 474 aaPredicted RBP12.33□□□□□ -0.44
VPS53-202ENST00000389040 HACL1Q9UJ83 578 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 HDAC9Q9UKV0 1011 aa12.33□□□□□ -0.44
VPS53-202ENST00000389040 MAST3O60307 1309 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 TTC41PQ6P2S7 1318 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 SALL3Q9BXA9 1300 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 SCNN1DP51172 638 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 ZNF280AP59817 542 aaPredicted RBP12.32□□□□□ -0.44
VPS53-202ENST00000389040 MFSD14BQ5SR56 506 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 CASC1Q6TDU7 716 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 USP50Q70EL3 339 aaPredicted RBP12.32□□□□□ -0.44
VPS53-202ENST00000389040 SPATA5Q8NB90 893 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 SLKQ9H2G2 1235 aaPredicted RBP12.32□□□□□ -0.44
VPS53-202ENST00000389040 ANTXR1Q9H6X2 564 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 KCNQ5Q9NR82 932 aa12.32□□□□□ -0.44
VPS53-202ENST00000389040 ADARB2Q9NS39 739 aaKnown RBP12.32□□□□□ -0.44
VPS53-202ENST00000389040 ATP5JP18859 108 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 GMPSP49915 693 aaPredicted RBP12.31□□□□□ -0.44
VPS53-202ENST00000389040 RASGRF1Q13972 1273 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 TICAM2Q86XR7 235 aa12.31□□□□□ -0.44
VPS53-202ENST00000389040 HSCBQ8IWL3 235 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms