RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NUTM1Q86Y26 1132 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 AGTPBP1Q9UPW5 1226 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 EXOC6BQ9Y2D4 811 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 PTGS1P23219 599 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 MAP3K21Q5TCX8 1036 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 ZNF365Q70YC5 407 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 VSIG1Q86XK7 387 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 JPH4Q96JJ6 628 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 RBM28Q9NW13 759 aaKnown RBP11.95□□□□□ -0.5
RTN3-206ENST00000377819 KDM5BQ9UGL1 1544 aa11.95□□□□□ -0.5
RTN3-206ENST00000377819 TXNDC9O14530 226 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 CCT2P78371 535 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 PLS1Q14651 629 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 TMTC4Q5T4D3 741 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 SEL1L2Q5TEA6 688 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 FAM71BQ8TC56 605 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 NAP1L4Q99733 375 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 CCDC94Q9BW85 323 aaPredicted RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 CALM1P0DP23 149 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 CALM2P0DP24 149 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 CALM3P0DP25 149 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 MX1P20591 662 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 RPL13P26373 211 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 SH3BGRP55822 239 aaPredicted RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 PPP2R5DQ14738 602 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 FNBP1Q96RU3 617 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 BAG1Q99933 345 aaPredicted RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 SYKP43405 635 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 FAM69CQ0P6D2 419 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 BIRC3Q13489 604 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 WDR44Q5JSH3 913 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 LDHAL6AQ6ZMR3 332 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 PDCD7Q8N8D1 485 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 ZMAT2Q96NC0 199 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 XAB2Q9HCS7 855 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 TFIP11Q9UBB9 837 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 ACTN4O43707 911 aaKnown RBP11.94□□□□□ -0.5
RTN3-206ENST00000377819 METAP2P50579 478 aaKnown RBP eCLIP11.94□□□□□ -0.5
RTN3-206ENST00000377819 CCDC26Q8TAB7 109 aa11.94□□□□□ -0.5
RTN3-206ENST00000377819 CROCCP2Q86T23 111 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 NEK11Q8NG66 645 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 ARHGEF2Q92974 986 aaKnown RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 CDK19Q9BWU1 502 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 RBM27Q9P2N5 1060 aaKnown RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 DNAI1Q9UI46 699 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 CCDC18Q5T9S5 1454 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 SYF2O95926 243 aaKnown RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 RUFY3Q7L099 469 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 PROCA1Q8NCQ7 364 aaPredicted RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 SLC26A6Q9BXS9 759 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 MCM7P33993 719 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 ZC3H6P61129 1189 aaKnown RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 CNTLNQ9NXG0 1405 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 LRRC9Q6ZRR7 1453 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 RAPGEF6Q8TEU7 1601 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 IRX4P78413 519 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 ARHGAP4P98171 946 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 ANKRD20A3Q5VUR7 823 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 EP400NLQ6ZTU2 488 aa11.93□□□□□ -0.5
RTN3-206ENST00000377819 TSR2Q969E8 191 aaKnown RBP11.93□□□□□ -0.5
RTN3-206ENST00000377819 SPDYE16A6NNV3 312 aaPredicted RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 SPECC1L-ADORA2AF8WAN1 911 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 SPDYE2Q495Y8 402 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 AMOTQ4VCS5 1084 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 UTP14CQ5TAP6 766 aaKnown RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 TMEM132EQ6IEE7 984 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 KIFAP3Q92845 792 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 NGLY1Q96IV0 654 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 PRIMPOLQ96LW4 560 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 ZC4H2Q9NQZ6 224 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 NBPF1Q3BBV0 1214 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 NCOA7Q8NI08 942 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 IFT81Q8WYA0 676 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 RIOK1Q9BRS2 568 aaKnown RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 PLEKHH1Q9ULM0 1364 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 HECW1Q76N89 1606 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 SPOPO43791 374 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 KANK4Q5T7N3 995 aaPredicted RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 TRIM6Q9C030 488 aaPredicted RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 TSPY3P0CV98 308 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 TSPY8P0CW00 308 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 KRT3P12035 628 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 AKNAD1Q5T1N1 836 aa11.92□□□□□ -0.5
RTN3-206ENST00000377819 ZGPATQ8N5A5 531 aaKnown RBP11.92□□□□□ -0.5
RTN3-206ENST00000377819 PHBP35232 272 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 TTC31Q49AM3 519 aaPredicted RBP11.91□□□□□ -0.5
RTN3-206ENST00000377819 KCNH5Q8NCM2 988 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 JDP2Q8WYK2 163 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 ZNF830Q96NB3 372 aaPredicted RBP11.91□□□□□ -0.5
RTN3-206ENST00000377819 CLSTN2Q9H4D0 955 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 FAM8A1Q9UBU6 413 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 MAN1A1P33908 653 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 PDCD2Q16342 344 aaPredicted RBP11.91□□□□□ -0.5
RTN3-206ENST00000377819 KRT23Q9C075 422 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 PFDN6O15212 129 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 GBP1P32455 592 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 TERF1P54274 439 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 WTAPQ15007 396 aa11.91□□□□□ -0.5
RTN3-206ENST00000377819 ISM2Q6H9L7 571 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms