RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 ABCC12Q96J65 1359 aa16.47■□□□□ 0.23
MSH5-202ENST00000375740 PFKFB2O60825 505 aa16.47■□□□□ 0.23
MSH5-202ENST00000375740 CCDC183Q5T5S1 534 aa16.47■□□□□ 0.23
MSH5-202ENST00000375740 CHST3Q7LGC8 479 aa16.47■□□□□ 0.23
MSH5-202ENST00000375740 HELBQ8NG08 1087 aaPredicted RBP16.47■□□□□ 0.23
MSH5-202ENST00000375740 AKAP11Q9UKA4 1901 aa16.46■□□□□ 0.23
MSH5-202ENST00000375740 DDX11Q96FC9 970 aa16.46■□□□□ 0.23
MSH5-202ENST00000375740 ZNF512BQ96KM6 892 aaPredicted RBP16.46■□□□□ 0.23
MSH5-202ENST00000375740 AGXT2Q9BYV1 514 aa16.46■□□□□ 0.23
MSH5-202ENST00000375740 TTC12Q9H892 705 aaPredicted RBP16.46■□□□□ 0.23
MSH5-202ENST00000375740 CTNNA3Q9UI47 895 aa16.46■□□□□ 0.23
MSH5-202ENST00000375740 AK7Q96M32 723 aa16.46■□□□□ 0.23
MSH5-202ENST00000375740 CAMTA2O94983 1202 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 FGAP02671 866 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 KRT85P78386 507 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 UTP14AQ9BVJ6 771 aaKnown RBP16.45■□□□□ 0.22
MSH5-202ENST00000375740 PHKA1P46020 1223 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 HAND2P61296 217 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 PIP4K2BP78356 416 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 CCDC102BQ68D86 513 aa16.45■□□□□ 0.22
MSH5-202ENST00000375740 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.45■□□□□ 0.221e-12■■■■□ 21.6
MSH5-202ENST00000375740 KCNQ2O43526 872 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 NOLC1Q14978 699 aaKnown RBP eCLIP16.44■□□□□ 0.22
MSH5-202ENST00000375740 BARGINQ6ZT62 677 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 TTC6Q86TZ1 520 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 SMARCC2Q8TAQ2 1214 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 PIH1D3Q9NQM4 214 aaKnown RBP16.44■□□□□ 0.22
MSH5-202ENST00000375740 MYH7P12883 1935 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 GPAA1O43292 621 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 CCT2P78371 535 aaKnown RBP16.44■□□□□ 0.22
MSH5-202ENST00000375740 IMMTQ16891 758 aaKnown RBP16.44■□□□□ 0.22
MSH5-202ENST00000375740 LLPHQ9BRT6 129 aaKnown RBP16.44■□□□□ 0.22
MSH5-202ENST00000375740 TFIP11Q9UBB9 837 aaKnown RBP16.44■□□□□ 0.22
MSH5-202ENST00000375740 NWD2Q9ULI1 1742 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 MROH5Q6ZUA9 1318 aa16.44■□□□□ 0.22
MSH5-202ENST00000375740 ADD2P35612 726 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 PUM3Q15397 648 aaKnown RBP16.43■□□□□ 0.22
MSH5-202ENST00000375740 SLC9C2Q5TAH2 1124 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 LPIN2Q92539 896 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 SEC31BQ9NQW1 1179 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 MYH14Q7Z406 1995 aaKnown RBP16.43■□□□□ 0.22
MSH5-202ENST00000375740 LETM1O95202 739 aaPredicted RBP16.43■□□□□ 0.22
MSH5-202ENST00000375740 CTDNEP1O95476 244 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 FGFR2P21802 821 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 TTF1Q15361 905 aaPredicted RBP16.43■□□□□ 0.22
MSH5-202ENST00000375740 ZSCAN25Q6NSZ9 544 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 FAM184AQ8NB25 1140 aa16.43■□□□□ 0.22
MSH5-202ENST00000375740 NAP1L2Q9ULW6 460 aaPredicted RBP16.43■□□□□ 0.22
MSH5-202ENST00000375740 NSUN7Q8NE18 718 aaKnown RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 NIP7Q9Y221 180 aaKnown RBP eCLIP16.42■□□□□ 0.22
MSH5-202ENST00000375740 H3BQV1 296 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 IDH1O75874 414 aaKnown RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 UQCRFS1P1P0C7P4 283 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 ARID4AP29374 1257 aaPredicted RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 PDIA3P30101 505 aaKnown RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 PARP10Q53GL7 1025 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 IFFO2Q5TF58 517 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 PIBF1Q8WXW3 757 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 MPHOSPH8Q99549 860 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 BCL2L12Q9HB09 334 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 NCOA5Q9HCD5 579 aaKnown RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 USP25Q9UHP3 1055 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 MYO5AQ9Y4I1 1855 aaKnown RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 SNAP23O00161 211 aa16.42■□□□□ 0.22
MSH5-202ENST00000375740 ZNF274Q96GC6 653 aaPredicted RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 GPHNQ9NQX3 736 aaPredicted RBP16.42■□□□□ 0.22
MSH5-202ENST00000375740 RESTQ13127 1097 aa16.41■□□□□ 0.22
MSH5-202ENST00000375740 ELP1O95163 1332 aa16.41■□□□□ 0.22
MSH5-202ENST00000375740 ZNF213O14771 459 aa16.41■□□□□ 0.22
MSH5-202ENST00000375740 GTF2F1P35269 517 aaKnown RBP eCLIP16.41■□□□□ 0.227e-15■■■■□ 25.6
MSH5-202ENST00000375740 SMARCC1Q92922 1105 aaPredicted RBP16.41■□□□□ 0.22
MSH5-202ENST00000375740 PRIMPOLQ96LW4 560 aa16.41■□□□□ 0.22
MSH5-202ENST00000375740 RREB1Q92766 1687 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 ZNF532Q9HCE3 1301 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 PTPDC1A2A3K4 754 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 NTSR2O95665 410 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 UBE3CQ15386 1083 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 FBXL16Q8N461 479 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 SPATA32Q96LK8 384 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 SCAND2PQ9GZW5 306 aaPredicted RBP16.4■□□□□ 0.22
MSH5-202ENST00000375740 SLC5A1P13866 664 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 HMGN5P82970 282 aaKnown RBP16.4■□□□□ 0.22
MSH5-202ENST00000375740 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
MSH5-202ENST00000375740 GTPBP4Q9BZE4 634 aaKnown RBP16.4■□□□□ 0.22
MSH5-202ENST00000375740 KIF3AQ9Y496 699 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 LRP5O75197 1615 aa16.4■□□□□ 0.22
MSH5-202ENST00000375740 PDE6AP16499 860 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 FOSBP53539 338 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 FAM98CQ17RN3 349 aaKnown RBP16.39■□□□□ 0.21
MSH5-202ENST00000375740 CCDC152Q4G0S7 254 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 GIMAP6Q6P9H5 292 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 MB21D2Q8IYB1 491 aaPredicted RBP16.39■□□□□ 0.21
MSH5-202ENST00000375740 WWC3Q9ULE0 1092 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 PRC1O43663 620 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 PPFIA3O75145 1194 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 U2AF2P26368 475 aaKnown RBP eCLIP16.39■□□□□ 0.218e-8■■■■□ 26.3
MSH5-202ENST00000375740 EVCP57679 992 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 SPATA5Q8NB90 893 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 NCOA7Q8NI08 942 aa16.39■□□□□ 0.21
MSH5-202ENST00000375740 LEO1Q8WVC0 666 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms