RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 LINS1Q8NG48 757 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 TIGD1Q96MW7 591 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 JAG2Q9Y219 1238 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 ITSN1Q15811 1721 aa7.5□□□□□ -1.21
SMC1A-202ENST00000375340 PRAMEF22A3QJZ6 481 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 CAVIN2O95810 425 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MRVI1Q9Y6F6 885 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MAP2P11137 1827 aaKnown RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 GOLGA8FQ08AF8 430 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 GOLGA8DPQ0D2H9 430 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 NBPF6Q5VWK0 638 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 NBPF4Q96M43 638 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 USP44Q9H0E7 712 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC196A0A1B0GTZ2 297 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 ATP2B3Q16720 1220 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MKNK2Q9HBH9 465 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 N4BP3O15049 544 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 TIMM10P62072 90 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 TAX1BP1Q86VP1 789 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 GPIHBP1Q8IV16 184 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 ALKQ9UM73 1620 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MCM7P33993 719 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 PROSER3Q2NL68 480 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 IP6K1Q92551 441 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 PHKBQ93100 1093 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MTMR6Q9Y217 621 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 KIAA1210Q9ULL0 1709 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 B4E1Z4 1266 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 EIF4A1P60842 406 aaKnown RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 PPP2R3AQ06190 1150 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 GOLGA1Q92805 767 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 FBXO3Q9UK99 471 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 CLTCQ00610 1675 aaKnown RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 STAT6P42226 847 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF569Q5MCW4 686 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 IFIT1BQ5T764 474 aaKnown RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MYO6Q9UM54 1294 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC194A0A1B0GVG4 234 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 MAP9Q49MG5 647 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 RNF187Q5TA31 235 aaPredicted RBP7.49□□□□□ -1.21
SMC1A-202ENST00000375340 TXLNBQ8N3L3 684 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 IL17REQ8NFR9 667 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 HELLSQ9NRZ9 838 aa7.49□□□□□ -1.21
SMC1A-202ENST00000375340 CYP7A1P22680 504 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 IL15P40933 162 aaPredicted RBP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 CACNA2D4Q7Z3S7 1137 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 TAF4BQ92750 862 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 TRIM47Q96LD4 638 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 ELP1O95163 1332 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 METTL22Q9BUU2 404 aaPredicted RBP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 NPHP3Q7Z494 1330 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 ADCY9O60503 1353 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 CTAGE9A4FU28 777 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC96Q2M329 555 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 HEATR3Q7Z4Q2 680 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 SHTN1A0MZ66 631 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 UBXN1Q04323 297 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 SYCP1Q15431 976 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 TSG101Q99816 390 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 RNF41Q9H4P4 317 aaPredicted RBP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 POTEB2H3BUK9 544 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 KCNA6P17658 529 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 KRT2P35908 639 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC191Q8NCU4 936 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 ACSBG1Q96GR2 724 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 TDRD12Q587J7 1177 aaKnown RBP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF589Q86UQ0 364 aaPredicted RBP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 KRT23Q9C075 422 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 GBP3Q9H0R5 595 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 RSPH14Q9UHP6 348 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 PHACTR2O75167 634 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 FANCCQ00597 558 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 IQCA1Q86XH1 822 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 PLCD4Q9BRC7 762 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 FTOQ9C0B1 505 aaKnown RBP eCLIP7.48□□□□□ -1.21
SMC1A-202ENST00000375340 PPLO60437 1756 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 GUCA1BQ9UMX6 200 aa7.48□□□□□ -1.21
SMC1A-202ENST00000375340 A0A1B0GUL7 405 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ERLIN2O94905 339 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 FAM107BQ9H098 131 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 EXOC1Q9NV70 894 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 M0R2C6 588 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ANO1Q5XXA6 986 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 KRBA2Q6ZNG9 492 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 KAT14Q9H8E8 782 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ARMT1Q9H993 441 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 CABP5Q9NP86 173 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF174Q15697 407 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 BAG1Q99933 345 aaPredicted RBP7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ARHGEF40Q8TER5 1519 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 GOLGA6L9A6NEM1 432 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 CCDC175P0C221 793 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 ZNF76P36508 570 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 NLRP12P59046 1061 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 XAGE2Q96GT9 111 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 KIF2CQ99661 725 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 TRMT44Q8IYL2 757 aaKnown RBP7.47□□□□□ -1.21
SMC1A-202ENST00000375340 MMRN2Q9H8L6 949 aa7.47□□□□□ -1.21
SMC1A-202ENST00000375340 E7EWF7 191 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms