RNA–Protein interactions for RNA: ENST00000374813.1

HLA-DOA-202, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 303 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-202ENST00000374813 MAPK8IP3Q9UPT6 1336 aa12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCL15-CCL14A0A0B4J2E2 113 aa12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCT4P50991 539 aaKnown RBP12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 MTFR1Q15390 333 aa12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCL15Q16663 113 aa12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 ZCCHC17Q9NP64 241 aaKnown RBP12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 BSDC1Q9NW68 430 aaPredicted RBP12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 CHPF2Q9P2E5 772 aa12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 DBF4Q9UBU7 674 aaPredicted RBP12.2□□□□□ -0.46
HLA-DOA-202ENST00000374813 ZNF804BA4D1E1 1349 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 LAMA2P24043 3122 aaKnown RBP12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 NBPF12Q5TAG4 269 aaPredicted RBP12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 BRI3BPQ8WY22 251 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 RNF208Q9H0X6 261 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 ELP3Q9H9T3 547 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 HYPKQ9NX55 129 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 STAP2Q9UGK3 403 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 MINPP1Q9UNW1 487 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 LEMD3Q9Y2U8 911 aa12.19□□□□□ -0.46
HLA-DOA-202ENST00000374813 PCCAP05165 728 aaPredicted RBP12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 GRK4P32298 578 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 BMP8BP34820 402 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 UBXN2AP68543 259 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 GTF2IP78347 998 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 TNFAIP1Q13829 316 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 RAET1EQ8TD07 263 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 TRIM47Q96LD4 638 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 SRRDQ9UH36 339 aa12.18□□□□□ -0.46
HLA-DOA-202ENST00000374813 FARP2O94887 1054 aaPredicted RBP12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 HOXB7P09629 217 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCL5P13501 91 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 HDGFL1Q5TGJ6 251 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 FAM43AQ8N2R8 423 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCDC191Q8NCU4 936 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 CCDC85AQ96PX6 553 aaPredicted RBP12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 ARHGAP39Q9C0H5 1083 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 VEZTQ9HBM0 779 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 BIN2Q9UBW5 565 aaPredicted RBP12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 SSC5DA1L4H1 1573 aa12.17□□□□□ -0.46
HLA-DOA-202ENST00000374813 SPTBN5Q9NRC6 3674 aaKnown RBP12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 CETPP11597 493 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 RIPK4P57078 832 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 MAP3K9P80192 1104 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 LMOD3Q0VAK6 560 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 RASA3Q14644 834 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 LRIT3Q3SXY7 679 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 U2AF1L4Q8WU68 220 aaKnown RBP12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 MTMR10Q9NXD2 777 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 RIPOR2Q9Y4F9 1068 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 CSADQ9Y600 493 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 ECM29Q5VYK3 1845 aa12.16□□□□□ -0.46
HLA-DOA-202ENST00000374813 CLRN2A0PK11 232 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 SPDYE2BA6NHP3 402 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 SGPL1O95470 568 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 SPDYE6P0CI01 402 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 PSMC4P43686 418 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 GOLGA2Q08379 1002 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 CFAP100Q494V2 611 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 TXNRD3Q86VQ6 643 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 PRMT6Q96LA8 375 aaPredicted RBP12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 ANKRD2Q9GZV1 360 aa12.15□□□□□ -0.46
HLA-DOA-202ENST00000374813 PRUNE2Q8WUY3 3088 aa12.14□□□□□ -0.47
HLA-DOA-202ENST00000374813 FMNL1O95466 1100 aaPredicted RBP12.14□□□□□ -0.47
HLA-DOA-202ENST00000374813 PRDM6Q9NQX0 595 aa12.14□□□□□ -0.47
HLA-DOA-202ENST00000374813 CWC25Q9NXE8 425 aaPredicted RBP12.14□□□□□ -0.47
HLA-DOA-202ENST00000374813 EYSQ5T1H1 3165 aa12.14□□□□□ -0.47
HLA-DOA-202ENST00000374813 CHL1O00533 1208 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 TFRCP02786 760 aaKnown RBP12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 RBM5P52756 815 aaKnown RBP eCLIP12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 SNAPC2Q13487 334 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 VGLL4Q14135 290 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 C17orf99Q6UX52 265 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 Q7L0L9 218 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 GDF15Q99988 308 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 CD209Q9NNX6 404 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 MUC3AQ02505 3323 aa12.13□□□□□ -0.47
HLA-DOA-202ENST00000374813 BTBD19C9JJ37 291 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 OSBPP22059 807 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 IGHMBP2P38935 993 aaKnown RBP12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 KCNJ4P48050 445 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 CTSWP56202 376 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 FKBP1AP62942 108 aaKnown RBP12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 ERO1BQ86YB8 467 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 SLAIN1Q8ND83 568 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 TTLL11Q8NHH1 800 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 CNKSR2Q8WXI2 1034 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 MYD88Q99836 296 aa12.12□□□□□ -0.47
HLA-DOA-202ENST00000374813 MYPNQ86TC9 1320 aa12.11□□□□□ -0.47
HLA-DOA-202ENST00000374813 F8W031 263 aaPredicted RBP12.11□□□□□ -0.47
HLA-DOA-202ENST00000374813 TNNI2P48788 182 aa12.11□□□□□ -0.47
HLA-DOA-202ENST00000374813 KRT24Q2M2I5 525 aa12.11□□□□□ -0.47
HLA-DOA-202ENST00000374813 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.11□□□□□ -0.47
HLA-DOA-202ENST00000374813 TTC28Q96AY4 2481 aa12.1□□□□□ -0.47
HLA-DOA-202ENST00000374813 SPDYE5A6NIY4 337 aa12.1□□□□□ -0.47
HLA-DOA-202ENST00000374813 BCAMP50895 628 aa12.1□□□□□ -0.47
HLA-DOA-202ENST00000374813 NECAB2Q7Z6G3 386 aa12.1□□□□□ -0.47
HLA-DOA-202ENST00000374813 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms