RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SCAF8Q9UPN6 1271 aaKnown RBP27.23■■□□□ 1.95
CCDC28B-201ENST00000373602 HIBADHP31937 336 aaKnown RBP27.22■■□□□ 1.95
CCDC28B-201ENST00000373602 GYG1P46976 350 aa27.22■■□□□ 1.95
CCDC28B-201ENST00000373602 NOGQ13253 232 aa27.22■■□□□ 1.95
CCDC28B-201ENST00000373602 TDRD7Q8NHU6 1098 aaKnown RBP27.22■■□□□ 1.95
CCDC28B-201ENST00000373602 KLHDC4Q8TBB5 520 aa27.22■■□□□ 1.95
CCDC28B-201ENST00000373602 FAM205AQ6ZU69 1335 aa27.21■■□□□ 1.95
CCDC28B-201ENST00000373602 METTL24Q5JXM2 366 aa27.21■■□□□ 1.95
CCDC28B-201ENST00000373602 VGLL2Q8N8G2 317 aa27.21■■□□□ 1.95
CCDC28B-201ENST00000373602 RFX5P48382 616 aaPredicted RBP27.2■■□□□ 1.94
CCDC28B-201ENST00000373602 FKBP1BP68106 108 aa27.2■■□□□ 1.94
CCDC28B-201ENST00000373602 MTMR14Q8NCE2 650 aa27.2■■□□□ 1.94
CCDC28B-201ENST00000373602 ARHGAP45Q92619 1136 aa27.2■■□□□ 1.94
CCDC28B-201ENST00000373602 JAG2Q9Y219 1238 aa27.2■■□□□ 1.94
CCDC28B-201ENST00000373602 KIF16BQ96L93 1317 aa27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 FAM155AB1AL88 458 aaPredicted RBP27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 PDE8BO95263 885 aa27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 UBTFL1P0CB47 393 aaPredicted RBP27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 CCDC102AQ96A19 550 aa27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 ZIC5Q96T25 663 aa27.19■■□□□ 1.94
CCDC28B-201ENST00000373602 F8W031 263 aaPredicted RBP27.18■■□□□ 1.94
CCDC28B-201ENST00000373602 ZNF157P51786 506 aaPredicted RBP27.18■■□□□ 1.94
CCDC28B-201ENST00000373602 DLGAP5Q15398 846 aa27.18■■□□□ 1.94
CCDC28B-201ENST00000373602 FBXO33Q7Z6M2 555 aa27.18■■□□□ 1.94
CCDC28B-201ENST00000373602 APOBEC3FQ8IUX4 373 aaKnown RBP27.18■■□□□ 1.94
CCDC28B-201ENST00000373602 PAPPA2Q9BXP8 1791 aa27.17■■□□□ 1.94
CCDC28B-201ENST00000373602 PRAMEF18Q5VWM3 479 aa27.17■■□□□ 1.94
CCDC28B-201ENST00000373602 EYA2O00167 538 aa27.16■■□□□ 1.94
CCDC28B-201ENST00000373602 PTPN12Q05209 780 aaKnown RBP27.16■■□□□ 1.94
CCDC28B-201ENST00000373602 CA12O43570 354 aa27.15■■□□□ 1.94
CCDC28B-201ENST00000373602 CFAP100Q494V2 611 aa27.15■■□□□ 1.94
CCDC28B-201ENST00000373602 MFSD14BQ5SR56 506 aa27.15■■□□□ 1.94
CCDC28B-201ENST00000373602 HDAC5Q9UQL6 1122 aa27.15■■□□□ 1.94
CCDC28B-201ENST00000373602 SLC10A3P09131 477 aa27.14■■□□□ 1.94
CCDC28B-201ENST00000373602 INTS3Q68E01 1043 aaKnown RBP27.14■■□□□ 1.94
CCDC28B-201ENST00000373602 VPS37DQ86XT2 251 aa27.14■■□□□ 1.94
CCDC28B-201ENST00000373602 PCDHAC2Q9Y5I4 1007 aa27.14■■□□□ 1.94
CCDC28B-201ENST00000373602 SPDYE2BA6NHP3 402 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 SPDYE6P0CI01 402 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 FGFR2P21802 821 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 CAVIN4Q5BKX8 364 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 MOB2Q70IA6 237 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 PRMT6Q96LA8 375 aaPredicted RBP27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 MEIS3Q99687 375 aa27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 LRRFIP2Q9Y608 721 aaKnown RBP27.13■■□□□ 1.93
CCDC28B-201ENST00000373602 NF2P35240 595 aa27.12■■□□□ 1.93
CCDC28B-201ENST00000373602 HNRNPUQ00839 825 aaKnown RBP eCLIP27.12■■□□□ 1.93
CCDC28B-201ENST00000373602 PUM3Q15397 648 aaKnown RBP27.12■■□□□ 1.93
CCDC28B-201ENST00000373602 ATG9AQ7Z3C6 839 aa27.12■■□□□ 1.93
CCDC28B-201ENST00000373602 FBXO3Q9UK99 471 aa27.12■■□□□ 1.93
CCDC28B-201ENST00000373602 IPO8O15397 1037 aaKnown RBP27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 MYO1BO43795 1136 aa27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 KIF23Q02241 960 aaPredicted RBP27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 RASAL3Q86YV0 1011 aa27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 TSKSQ9UJT2 592 aa27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 TTF2Q9UNY4 1162 aaKnown RBP27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 COL1A1P02452 1464 aaPredicted RBP27.11■■□□□ 1.93
CCDC28B-201ENST00000373602 UBE2Q2LH0YL09 131 aa27.1■■□□□ 1.93
CCDC28B-201ENST00000373602 IFIT1P09914 478 aaKnown RBP27.1■■□□□ 1.93
CCDC28B-201ENST00000373602 BCAMP50895 628 aa27.1■■□□□ 1.93
CCDC28B-201ENST00000373602 DEFB129Q9H1M3 183 aa27.1■■□□□ 1.93
CCDC28B-201ENST00000373602 IQSEC3Q9UPP2 1182 aaPredicted RBP27.1■■□□□ 1.93
CCDC28B-201ENST00000373602 ECM29Q5VYK3 1845 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 BCAR3O75815 825 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 CIAO1O76071 339 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 TRIM27P14373 513 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 RBM5P52756 815 aaKnown RBP eCLIP27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 TTLL12Q14166 644 aaPredicted RBP27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 SERPINA10Q9UK55 444 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 ARAP2Q8WZ64 1704 aa27.09■■□□□ 1.93
CCDC28B-201ENST00000373602 CLRN2A0PK11 232 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 ATF7IPQ6VMQ6 1270 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 TBC1D22AQ8WUA7 517 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 LPIN2Q92539 896 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 PPP2R3BQ9Y5P8 575 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 AOX1Q06278 1338 aa27.08■■□□□ 1.93
CCDC28B-201ENST00000373602 FRAT2O75474 233 aaPredicted RBP27.07■■□□□ 1.92
CCDC28B-201ENST00000373602 GNAI3P08754 354 aa27.07■■□□□ 1.92
CCDC28B-201ENST00000373602 SLC5A1P13866 664 aa27.07■■□□□ 1.92
CCDC28B-201ENST00000373602 CHAF1AQ13111 956 aaPredicted RBP27.07■■□□□ 1.92
CCDC28B-201ENST00000373602 SIL1Q9H173 461 aa27.07■■□□□ 1.92
CCDC28B-201ENST00000373602 GRIK5Q16478 980 aa27.06■■□□□ 1.92
CCDC28B-201ENST00000373602 FRAT1Q92837 279 aaPredicted RBP27.06■■□□□ 1.92
CCDC28B-201ENST00000373602 COPRSQ9NQ92 184 aa27.06■■□□□ 1.92
CCDC28B-201ENST00000373602 CAPN15O75808 1086 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 ARMC9Q7Z3E5 817 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 CSRNP1Q96S65 589 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 VEZTQ9HBM0 779 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 CEP126Q9P2H0 1117 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 TNNQ9UQP3 1299 aa27.05■■□□□ 1.92
CCDC28B-201ENST00000373602 IL15P40933 162 aaPredicted RBP27.04■■□□□ 1.92
CCDC28B-201ENST00000373602 REM2Q8IYK8 340 aaPredicted RBP27.04■■□□□ 1.92
CCDC28B-201ENST00000373602 SAGE1Q9NXZ1 904 aa27.04■■□□□ 1.92
CCDC28B-201ENST00000373602 PA2G4Q9UQ80 394 aaKnown RBP27.04■■□□□ 1.92
CCDC28B-201ENST00000373602 CRKP46108 304 aa27.03■■□□□ 1.92
CCDC28B-201ENST00000373602 HDLBPQ00341 1268 aaKnown RBP27.03■■□□□ 1.92
CCDC28B-201ENST00000373602 PRKG1Q13976 671 aa27.03■■□□□ 1.92
CCDC28B-201ENST00000373602 SPDYE2Q495Y8 402 aa27.03■■□□□ 1.92
CCDC28B-201ENST00000373602 DZIP1LQ8IYY4 767 aaKnown RBP27.03■■□□□ 1.92
CCDC28B-201ENST00000373602 ZNF70Q9UC06 446 aaPredicted RBP27.03■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms