RNA–Protein interactions for RNA: ENST00000371142.8

TM9SF3-201, Transcript of transmembrane 9 superfamily member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF3, Length 6,141 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-201ENST00000371142 PTPDC1A2A3K4 754 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 TTC41PQ6P2S7 1318 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 TSPYL6Q8N831 410 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 PRIM1P49642 420 aaKnown RBP25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 KRT222Q8N1A0 295 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 KIF4AO95239 1232 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 CALML3P27482 149 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 DDB1Q16531 1140 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 NYXQ9GZU5 481 aa25.09■■□□□ 1.61
TM9SF3-201ENST00000371142 PRPHP41219 470 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 C8orf37Q96NL8 207 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 ZKSCAN3Q9BRR0 538 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 KIF5AQ12840 1032 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 SREK1Q8WXA9 508 aaKnown RBP25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 SRRTQ9BXP5 876 aaKnown RBP25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 KRT83P78385 493 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 MRPS9P82933 396 aaKnown RBP25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 GUCA1BQ9UMX6 200 aa25.08■■□□□ 1.61
TM9SF3-201ENST00000371142 NEK11Q8NG66 645 aa25.08■■□□□ 1.6
TM9SF3-201ENST00000371142 GPATCH11Q8N954 259 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 CCDC42Q96M95 316 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 SNX21Q969T3 373 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 NSFL1CQ9UNZ2 370 aaKnown RBP25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 LZTFL1Q9NQ48 299 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 CLEC11AQ9Y240 323 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 LINS1Q8NG48 757 aa25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 NSRP1Q9H0G5 558 aaKnown RBP25.07■■□□□ 1.6
TM9SF3-201ENST00000371142 PLCB3Q01970 1234 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 RUFY3Q7L099 469 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 ATRIPQ8WXE1 791 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 CCDC63Q8NA47 563 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 SELENOSQ9BQE4 189 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 DMRT2Q9Y5R5 561 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 XRCC6P12956 609 aaKnown RBP eCLIP25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 KRT86O43790 486 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 LMBR1Q8WVP7 490 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 LRRC45Q96CN5 670 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 BICDL2A1A5D9 508 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 BICC1Q9H694 974 aaKnown RBP25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 NPHP3Q7Z494 1330 aa25.06■■□□□ 1.6
TM9SF3-201ENST00000371142 C8orf34Q49A92 452 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 RSPH14Q9UHP6 348 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 SMIM23A6NLE4 172 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 HSPA4P34932 840 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 IFNKQ9P0W0 207 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 ZC3H12CQ9C0D7 883 aaKnown RBP25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 GOLGA1Q92805 767 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 POLKQ9UBT6 870 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 IL2RBP14784 551 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 SP4Q02446 784 aa25.05■■□□□ 1.6
TM9SF3-201ENST00000371142 CCDC77Q9BR77 488 aa25.04■■□□□ 1.6
TM9SF3-201ENST00000371142 DTHD1Q6ZMT9 781 aa25.04■■□□□ 1.6
TM9SF3-201ENST00000371142 TPTE2Q6XPS3 522 aa25.04■■□□□ 1.6
TM9SF3-201ENST00000371142 OPA1O60313 960 aa25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 ZNF569Q5MCW4 686 aa25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 DHX32Q7L7V1 743 aaKnown RBP25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 MAP3K9P80192 1104 aa25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 LDHBP07195 334 aaKnown RBP25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 SLU7O95391 586 aaKnown RBP25.03■■□□□ 1.6
TM9SF3-201ENST00000371142 APBB1IPQ7Z5R6 666 aaPredicted RBP25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 DCTPP1Q9H773 170 aa25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 RLBP1P12271 317 aa25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 HS2ST1Q7LGA3 356 aa25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 SAP30BPQ9UHR5 308 aaKnown RBP25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 MAP3K5Q99683 1374 aa25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 IFT81Q8WYA0 676 aa25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 RTCBQ9Y3I0 505 aaKnown RBP25.02■■□□□ 1.6
TM9SF3-201ENST00000371142 VAMP4O75379 141 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 CCDC6Q16204 474 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 DCAF17Q5H9S7 520 aaPredicted RBP25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 PLCG2P16885 1265 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 PKD2L1Q9P0L9 805 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 MNAT1P51948 309 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 GNA11P29992 359 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 CCDC129Q6ZRS4 1044 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 PPP1R9BQ96SB3 815 aa25.01■■□□□ 1.59
TM9SF3-201ENST00000371142 ATP2A1O14983 1001 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 RHOXF2BP0C7M4 288 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 RHOXF2Q9BQY4 288 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 CPA1P15085 419 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 RAPGEF1Q13905 1077 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 ZNF174Q15697 407 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 THOC2Q8NI27 1593 aaKnown RBP25■■□□□ 1.59
TM9SF3-201ENST00000371142 CHMLP26374 656 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 PLEKHM2Q8IWE5 1019 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 VWA3AA6NCI4 1184 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 BRAPQ7Z569 592 aa25■■□□□ 1.59
TM9SF3-201ENST00000371142 SYT10Q6XYQ8 523 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 MBD4O95243 580 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 ZKSCAN5Q9Y2L8 839 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 PARP3Q9Y6F1 533 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 NCBP1Q09161 790 aaKnown RBP24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 FLT4P35916 1363 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 RAB3GAP1Q15042 981 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 STMN4Q9H169 189 aaPredicted RBP24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 TFCP2L1Q9NZI6 479 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 CCDC25Q86WR0 208 aa24.99■■□□□ 1.59
TM9SF3-201ENST00000371142 PARP1P09874 1014 aaKnown RBP24.98■■□□□ 1.59
TM9SF3-201ENST00000371142 ATP6V0A2Q9Y487 856 aa24.98■■□□□ 1.59
TM9SF3-201ENST00000371142 A0A1B0GVL5 298 aa24.98■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms