RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 PPP4R2Q9NY27 417 aa17.03■□□□□ 0.32
TPM3-211ENST00000368531 ZBTB12Q9Y330 459 aaPredicted RBP17.03■□□□□ 0.32
TPM3-211ENST00000368531 ZC3H4Q9UPT8 1303 aaKnown RBP17.02■□□□□ 0.32
TPM3-211ENST00000368531 YY1P25490 414 aa17.02■□□□□ 0.32
TPM3-211ENST00000368531 SCARF1Q14162 830 aa17.02■□□□□ 0.32
TPM3-211ENST00000368531 CHD1LQ86WJ1 897 aa17.02■□□□□ 0.32
TPM3-211ENST00000368531 OTUD7AQ8TE49 926 aaPredicted RBP17.02■□□□□ 0.32
TPM3-211ENST00000368531 SNRKQ9NRH2 765 aa17.02■□□□□ 0.32
TPM3-211ENST00000368531 ZNF646O15015 1829 aaPredicted RBP17.02■□□□□ 0.31
TPM3-211ENST00000368531 GLTPD2A6NH11 291 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 UQCRFS1P1P0C7P4 283 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 NUCB1Q02818 461 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 RASGRF1Q13972 1273 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 TSHZ3Q63HK5 1081 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 PI16Q6UXB8 463 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 DENND2AQ9ULE3 1009 aa17.01■□□□□ 0.31
TPM3-211ENST00000368531 AKAP11Q9UKA4 1901 aa17■□□□□ 0.31
TPM3-211ENST00000368531 VIL1P09327 827 aaKnown RBP17■□□□□ 0.31
TPM3-211ENST00000368531 ARID4AP29374 1257 aaPredicted RBP17■□□□□ 0.31
TPM3-211ENST00000368531 MCAMP43121 646 aa17■□□□□ 0.31
TPM3-211ENST00000368531 GMPSP49915 693 aaPredicted RBP17■□□□□ 0.31
TPM3-211ENST00000368531 DACT2Q5SW24 774 aa17■□□□□ 0.31
TPM3-211ENST00000368531 STRIP1Q5VSL9 837 aa17■□□□□ 0.31
TPM3-211ENST00000368531 RSBN1LQ6PCB5 846 aaPredicted RBP17■□□□□ 0.31
TPM3-211ENST00000368531 GPC2Q8N158 579 aa17■□□□□ 0.31
TPM3-211ENST00000368531 COL1A1P02452 1464 aaPredicted RBP16.99■□□□□ 0.31
TPM3-211ENST00000368531 FAM205AQ6ZU69 1335 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 KDM2BQ8NHM5 1336 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 F8W031 263 aaPredicted RBP16.99■□□□□ 0.31
TPM3-211ENST00000368531 MFSD14BQ5SR56 506 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 CENPQQ7L2Z9 268 aaPredicted RBP16.99■□□□□ 0.31
TPM3-211ENST00000368531 SPATA5Q8NB90 893 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 HMG20BQ9P0W2 317 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 NDUFB9Q9Y6M9 179 aa16.99■□□□□ 0.31
TPM3-211ENST00000368531 SHTN1A0MZ66 631 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 SEMA3EO15041 775 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 KIAA0825Q8IV33 1275 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 CERS5Q8N5B7 392 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 GPATCH3Q96I76 525 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 BOLA2Q9H3K6 86 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 ECHDC1Q9NTX5 307 aa16.98■□□□□ 0.31
TPM3-211ENST00000368531 MYO5AQ9Y4I1 1855 aaKnown RBP16.98■□□□□ 0.31
TPM3-211ENST00000368531 ZAP70P43403 619 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 GRIK5Q16478 980 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 TBC1D9Q6ZT07 1266 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 WDR66Q8TBY9 1149 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 DNAJC2Q99543 621 aaKnown RBP16.97■□□□□ 0.31
TPM3-211ENST00000368531 RRAGCQ9HB90 399 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 ABCF2Q9UG63 623 aa16.97■□□□□ 0.31
TPM3-211ENST00000368531 MX1P20591 662 aa16.96■□□□□ 0.31
TPM3-211ENST00000368531 LMOD1P29536 600 aaPredicted RBP16.96■□□□□ 0.31
TPM3-211ENST00000368531 ZNF512BQ96KM6 892 aaPredicted RBP16.96■□□□□ 0.31
TPM3-211ENST00000368531 CNOT7Q9UIV1 285 aaKnown RBP16.96■□□□□ 0.31
TPM3-211ENST00000368531 ATP5JP18859 108 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 PDE4AP27815 886 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 EPS15P42566 896 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 SCNN1DP51172 638 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 RBM26Q5T8P6 1007 aaKnown RBP16.95■□□□□ 0.3
TPM3-211ENST00000368531 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 MICALL2Q8IY33 904 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 AGBL3Q8NEM8 1001 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 TBC1D22AQ8WUA7 517 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 NMRK2Q9NPI5 230 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 GPRC5DQ9NZD1 345 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 WDR90Q96KV7 1748 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 MYO3BQ8WXR4 1341 aa16.95■□□□□ 0.3
TPM3-211ENST00000368531 MAP4K4O95819 1239 aaPredicted RBP16.94■□□□□ 0.3
TPM3-211ENST00000368531 USP17L8P0C7I0 530 aa16.94■□□□□ 0.3
TPM3-211ENST00000368531 RPS12P25398 132 aaKnown RBP16.94■□□□□ 0.3
TPM3-211ENST00000368531 PDE1AP54750 535 aa16.94■□□□□ 0.3
TPM3-211ENST00000368531 FKBP1AP62942 108 aaKnown RBP16.94■□□□□ 0.3
TPM3-211ENST00000368531 EDC3Q96F86 508 aaKnown RBP16.94■□□□□ 0.3
TPM3-211ENST00000368531 GMLQ99445 158 aa16.94■□□□□ 0.3
TPM3-211ENST00000368531 ANTXR1Q9H6X2 564 aa16.94■□□□□ 0.3
TPM3-211ENST00000368531 TTF2Q9UNY4 1162 aaKnown RBP16.94■□□□□ 0.3
TPM3-211ENST00000368531 SALL3Q9BXA9 1300 aa16.94■□□□□ 0.3
TPM3-211ENST00000368531 SCN4AP35499 1836 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 POTECB2RU33 542 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 H7C1D1 291 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 GOLIM4O00461 696 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 CYP2E1P05181 493 aaPredicted RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 LDHBP07195 334 aaKnown RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 PRDX5P30044 214 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 SAMD7Q7Z3H4 446 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 PLEKHM2Q8IWE5 1019 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 ZGPATQ8N5A5 531 aaKnown RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.93■□□□□ 0.3
TPM3-211ENST00000368531 DPF2Q92785 391 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 GPBP1L1Q9HC44 474 aaPredicted RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 PIH1D3Q9NQM4 214 aaKnown RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 LRP2BPQ9P2M1 347 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 HACL1Q9UJ83 578 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 PDS5AQ29RF7 1337 aaKnown RBP16.93■□□□□ 0.3
TPM3-211ENST00000368531 TTC41PQ6P2S7 1318 aa16.93■□□□□ 0.3
TPM3-211ENST00000368531 ADAMTSL1Q8N6G6 1762 aa16.92■□□□□ 0.3
TPM3-211ENST00000368531 ERC2O15083 957 aa16.92■□□□□ 0.3
TPM3-211ENST00000368531 ERICH6Q7L0X2 663 aa16.92■□□□□ 0.3
TPM3-211ENST00000368531 OGFOD1Q8N543 542 aa16.92■□□□□ 0.3
TPM3-211ENST00000368531 PI4K2BQ8TCG2 481 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms