RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 MAP10Q9P2G4 905 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 HECW1Q76N89 1606 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 CCDC169A6NNP5 214 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 ATP2A2P16615 1042 aaKnown RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 BRDTQ58F21 947 aaPredicted RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 PLVAPQ9BX97 442 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 SLC52A1Q9NWF4 448 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 PPP6R1Q9UPN7 881 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 CCDC61Q9Y6R9 512 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 GSTO1P78417 241 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 KRT32Q14532 448 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 CCDC110Q8TBZ0 833 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 ATP6V0A2Q9Y487 856 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 SYNDIG1LA6NDD5 238 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 SPDYE3A6NKU9 549 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 K7ELQ4 463 aaPredicted RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 HSPA4P34932 840 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 MFSD6Q6ZSS7 791 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 TMCO5AQ8N6Q1 288 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 DDX12PQ92771 950 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 POLA1P09884 1462 aaPredicted RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 SLC4A1P02730 911 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 ATP6V1AP38606 617 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 BLVRAP53004 296 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 DNAJC21Q5F1R6 531 aaKnown RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 SETDB2Q96T68 719 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 NUF2Q9BZD4 464 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 C6orf50Q9HD87 102 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 SAP30BPQ9UHR5 308 aaKnown RBP11.01□□□□□ -0.65
CHD3-202ENST00000358181 MAP3K2Q9Y2U5 619 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 PLB1Q6P1J6 1458 aa11.01□□□□□ -0.65
CHD3-202ENST00000358181 SF3A3Q12874 501 aaKnown RBP eCLIP11□□□□□ -0.659e-16■■■■□ 23.7
CHD3-202ENST00000358181 CRNKL1Q9BZJ0 848 aaKnown RBP11□□□□□ -0.65
CHD3-202ENST00000358181 EHBP1L1Q8N3D4 1523 aa11□□□□□ -0.65
CHD3-202ENST00000358181 NAPAP54920 295 aa11□□□□□ -0.65
CHD3-202ENST00000358181 SESTD1Q86VW0 696 aa11□□□□□ -0.65
CHD3-202ENST00000358181 SELENOOQ9BVL4 669 aa11□□□□□ -0.65
CHD3-202ENST00000358181 RNF41Q9H4P4 317 aaPredicted RBP11□□□□□ -0.65
CHD3-202ENST00000358181 MOSPD1Q9UJG1 213 aa11□□□□□ -0.65
CHD3-202ENST00000358181 GOLIM4O00461 696 aa11□□□□□ -0.65
CHD3-202ENST00000358181 CIB2O75838 187 aa11□□□□□ -0.65
CHD3-202ENST00000358181 RABGAP1Q9Y3P9 1069 aa11□□□□□ -0.65
CHD3-202ENST00000358181 CDC5LQ99459 802 aaKnown RBP11□□□□□ -0.65
CHD3-202ENST00000358181 USP25Q9UHP3 1055 aa11□□□□□ -0.65
CHD3-202ENST00000358181 PTPDC1A2A3K4 754 aa11□□□□□ -0.65
CHD3-202ENST00000358181 PPP2R5AQ15172 486 aa11□□□□□ -0.65
CHD3-202ENST00000358181 TLDC2A0PJX2 215 aa11□□□□□ -0.65
CHD3-202ENST00000358181 LDHCP07864 332 aa11□□□□□ -0.65
CHD3-202ENST00000358181 IFIT1BQ5T764 474 aaKnown RBP11□□□□□ -0.65
CHD3-202ENST00000358181 SPDYE1Q8NFV5 336 aaPredicted RBP11□□□□□ -0.65
CHD3-202ENST00000358181 FAM193BQ96PV7 902 aaPredicted RBP11□□□□□ -0.65
CHD3-202ENST00000358181 CD109Q6YHK3 1445 aa11□□□□□ -0.65
CHD3-202ENST00000358181 HNRNPCL2B2RXH8 293 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 CASQ2O14958 399 aaPredicted RBP10.99□□□□□ -0.65
CHD3-202ENST00000358181 HNRNPCL1O60812 293 aaKnown RBP10.99□□□□□ -0.65
CHD3-202ENST00000358181 SLC39A6Q13433 755 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 RAPGEF1Q13905 1077 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 INF2Q27J81 1249 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 SSH1Q8WYL5 1049 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 JAKMIP2Q96AA8 810 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 PHF8Q9UPP1 1060 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 FSIP1Q8NA03 581 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 TRPC3Q13507 836 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 CCDC125Q86Z20 511 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 FNBP1Q96RU3 617 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 METTL14Q9HCE5 456 aaKnown RBP10.99□□□□□ -0.65
CHD3-202ENST00000358181 NUCB1Q02818 461 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 KRT33BQ14525 404 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 GKAP1Q5VSY0 366 aaPredicted RBP10.99□□□□□ -0.65
CHD3-202ENST00000358181 CCDC77Q9BR77 488 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 NAIPQ13075 1403 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 GRPEL1Q9HAV7 217 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 ANO10Q9NW15 660 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 USTQ9Y2C2 406 aa10.99□□□□□ -0.65
CHD3-202ENST00000358181 AKR1B10O60218 316 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 HOMEZQ8IX15 550 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 IFT81Q8WYA0 676 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 ZSCAN31Q96LW9 406 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 PAGR1Q9BTK6 254 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 PPP1R42Q7Z4L9 355 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 SLC7A5P2Q9GIP4 190 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.98□□□□□ -0.658e-7■■■■□ 20.3
CHD3-202ENST00000358181 SBNO2Q9Y2G9 1366 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 SPECC1L-ADORA2AF8WAN1 911 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 KSR1Q8IVT5 923 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 NEK1Q96PY6 1258 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 NUCKS1Q9H1E3 243 aaKnown RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 ZRANB1Q9UGI0 708 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 IFT140Q96RY7 1462 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 TROQ12816 1431 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 SMIM24O75264 130 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 ARID4AP29374 1257 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 MNAT1P51948 309 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 HP1BP3Q5SSJ5 553 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 NBPF3Q9H094 633 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 IDI1Q13907 227 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 TMEM259Q4ZIN3 620 aa10.98□□□□□ -0.65
CHD3-202ENST00000358181 SDCCAG8Q86SQ7 713 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 RAB3IPQ96QF0 476 aaPredicted RBP10.98□□□□□ -0.65
CHD3-202ENST00000358181 GDPD2Q9HCC8 539 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms